RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 GSDMCQ9BYG8 508 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 TDRKHQ9Y2W6 561 aaKnown RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PSMD11O00231 422 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SYN3O14994 580 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 UBXN7O94888 489 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CYB5AP00167 134 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 EPORP19235 508 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SOX11P35716 441 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 RORCP51449 518 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CASP7P55210 303 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 LIPEQ05469 1076 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PPP3CAQ08209 521 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 BTG3Q14201 252 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ADGRE1Q14246 886 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 KCNA10Q16322 511 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 GPR33Q49SQ1 333 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 FAM171BQ6P995 826 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 FRMD7Q6ZUT3 714 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PIGZQ86VD9 579 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 FBXO16Q8IX29 292 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ZBTB2Q8N680 514 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 MAB21L3Q8N8X9 362 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ZSCAN18Q8TBC5 510 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 DENND1AQ8TEH3 1009 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 LINGO1Q96FE5 620 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PHF12Q96QT6 1004 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 POP1Q99575 1024 aaKnown RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 HSD17B14Q9BPX1 270 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 MAPKAP1Q9BPZ7 522 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ERVW-1Q9UQF0 538 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CLDN4O14493 209 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 GNB5O14775 395 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 AIREO43918 545 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CBSLP0DN79 551 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 EPCAMP16422 314 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CBSP35520 551 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 MYBPC1Q00872 1141 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CBLBQ13191 982 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SLC39A12Q504Y0 691 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PYHIN1Q6K0P9 492 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SLC25A25Q6KCM7 469 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 TATDN1Q6P1N9 297 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 MED27Q6P2C8 311 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SCUBE3Q8IX30 993 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 EFCAB3Q8N7B9 438 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CERKQ8TCT0 537 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SDCBP2Q9H190 292 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 TMEM45AQ9NWC5 275 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ZIM2Q9NZV7 527 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SEC14L3Q9UDX4 400 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CNTN6Q9UQ52 1028 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF99A8MXY4 864 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 TULP2O00295 520 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 H6PDO95479 791 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 C2P06681 752 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CDH1P12830 882 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 LAMP2P13473 410 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 AMD1P17707 334 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CMPK1P30085 196 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ADRA1BP35368 520 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 MANFP55145 182 aaKnown RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 HNRNPDQ14103 355 aaKnown RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 MED22Q15528 200 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 NOMO2Q5JPE7 1267 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 RNASEH2BQ5TBB1 312 aaKnown RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 HECTD2Q5U5R9 776 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 DNM1P34Q6PK57 102 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 FAM180AQ6UWF9 173 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SERPINA13PQ6UXR4 307 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ATG14Q6ZNE5 492 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CATSPERGQ6ZRH7 1159 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 GPC2Q8N158 579 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SUN5Q8TC36 379 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PIK3R5Q8WYR1 880 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 NTAN1Q96AB6 310 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 EFHD2Q96C19 240 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CDT1Q9H211 546 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF358Q9NW07 568 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CLIC5Q9NZA1 410 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 FBXO9Q9UK97 447 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 TCAF1Q9Y4C2 921 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PPRC1Q5VV67 1664 aaKnown RBP6.05□□□□□ -1.44
SCN1A-203ENST00000409050 ERCC6L2Q5T890 1561 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 A0A1B0GVC2 190 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 ILVBLA1L0T0 632 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 CELF2O95319 508 aaKnown RBP6.05□□□□□ -1.44
SCN1A-203ENST00000409050 GIMD1P0DJR0 217 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 LAG3P18627 525 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 MTHFRP42898 656 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 PTPN5P54829 565 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 KCNJ2P63252 427 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 ECT2LQ008S8 904 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 IL10RBQ08334 325 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 OLFML2AQ68BL7 652 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 TCEAL6Q6IPX3 200 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 CES5AQ6NT32 575 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 LLGL2Q6P1M3 1020 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 ZCCHC23Q6ZST2 131 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 TAF8Q7Z7C8 310 aa6.05□□□□□ -1.44
SCN1A-203ENST00000409050 SLC34A3Q8N130 599 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms