RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 EFEMP1Q12805 493 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 TYSND1Q2T9J0 566 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 XKR7Q5GH72 579 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 RAP1GAP2Q684P5 730 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 MON1AQ86VX9 555 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 PPP1R14BQ96C90 147 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 MYEOVQ96EZ4 313 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 RNF145Q96MT1 663 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 BRINP2Q9C0B6 783 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 NTN4Q9HB63 628 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 ABI2Q9NYB9 513 aaPredicted RBP12.61□□□□□ -0.39
SHMT1-205ENST00000395684 IFT80Q9P2H3 777 aaPredicted RBP12.61□□□□□ -0.39
SHMT1-205ENST00000395684 ASB1Q9Y576 335 aa12.61□□□□□ -0.39
SHMT1-205ENST00000395684 LCHNA4D1U4 455 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 FGF1P05230 155 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 INHBBP09529 407 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 HLA-DPA1P20036 260 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 OGNP20774 298 aaKnown RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 ELK4P28324 431 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 TTKP33981 857 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 HLCSP50747 726 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 EEFSECP57772 596 aaKnown RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 IL10RBQ08334 325 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 BNIP3Q12983 259 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 GRIK2Q13002 908 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 MAP2K5Q13163 448 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 SERINC3Q13530 473 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 ZIK1Q3SY52 487 aaPredicted RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 OTUD3Q5T2D3 398 aaPredicted RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 GDF6Q6KF10 455 aaPredicted RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 TMEM214Q6NUQ4 689 aaKnown RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 FAM117BQ6P1L5 589 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 DCBLD1Q8N8Z6 715 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 PROKR1Q8TCW9 393 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 GIPC3Q8TF64 312 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 NUDT8Q8WV74 236 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 PEX13Q92968 403 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 MUS81Q96NY9 551 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 POLR1EQ9GZS1 481 aaKnown RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 SYTL2Q9HCH5 934 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 CPA4Q9UI42 421 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 LEF1Q9UJU2 399 aaPredicted RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 ACTL7AQ9Y615 435 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 RAMP2O60895 175 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 ESRRBO95718 433 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 MATN1P21941 496 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 CD52P31358 61 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 MRPL19P49406 292 aaKnown RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 MAPK10P53779 464 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 EMX2Q04743 252 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 YWHAHQ04917 246 aaPredicted RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 FXNQ16595 210 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 CCNYL2Q5T2Q4 361 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 SLC2A7Q6PXP3 512 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 RALGPS2Q86X27 583 aaPredicted RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 RIMKLAQ8IXN7 391 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 BPIFB1Q8TDL5 484 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 ISG20Q96AZ6 181 aaKnown RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 SUSD3Q96L08 255 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 TAS2R13Q9NYV9 303 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 PKD2L2Q9NZM6 624 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 PCTPQ9UKL6 214 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 SCML2Q9UQR0 700 aa12.6□□□□□ -0.39
SHMT1-205ENST00000395684 MAGED1Q9Y5V3 778 aaPredicted RBP12.6□□□□□ -0.39
SHMT1-205ENST00000395684 DOCK4Q8N1I0 1966 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 KANSL1LA0AUZ9 987 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 NPEPPSL1A6NEC2 478 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 UPK1AO00322 258 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 SNX2O60749 519 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 UROSP10746 265 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 IMPDH2P12268 514 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 HTR1EP28566 365 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 CDKN1CP49918 316 aaPredicted RBP12.59□□□□□ -0.39
SHMT1-205ENST00000395684 NAA20P61599 178 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 TUSC3Q13454 348 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 ZNF829Q3KNS6 432 aaPredicted RBP12.59□□□□□ -0.39
SHMT1-205ENST00000395684 AASDHQ4L235 1098 aaPredicted RBP12.59□□□□□ -0.39
SHMT1-205ENST00000395684 ANKRD26P1Q6NSI1 321 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 ITIH5Q86UX2 942 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 MIB1Q86YT6 1006 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 GPR152Q8TDT2 470 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 NSMCE3Q96MG7 304 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 PARK7Q99497 189 aaKnown RBP12.59□□□□□ -0.39
SHMT1-205ENST00000395684 GPR21Q99679 349 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 HGH1Q9BTY7 390 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 TBCCD1Q9NVR7 557 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 GMIPQ9P107 970 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 PADI3Q9ULW8 664 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 PCDHGA11Q9Y5H2 935 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 PATJQ8NI35 1801 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 ZNF623O75123 536 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 EPOP01588 193 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 TCF3P15923 654 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 ZNF182P17025 639 aaPredicted RBP12.59□□□□□ -0.39
SHMT1-205ENST00000395684 GRK4P32298 578 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 HK3P52790 923 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 SELPLGQ14242 412 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 C6orf136Q5SQH8 315 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 GLYATQ6IB77 296 aa12.59□□□□□ -0.39
SHMT1-205ENST00000395684 FAM43BQ6ZT52 329 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms