RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 IPO13O94829 963 aaKnown RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 PGLSO95336 258 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 ALAS2P22557 587 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 CXCL12P48061 93 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 RXRGP48443 463 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 TOMM20Q15388 145 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 ASTE1Q2TB18 679 aaPredicted RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 PHF19Q5T6S3 580 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 LIPMQ5VYY2 423 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 FAF1Q9UNN5 650 aaPredicted RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 TTC34A8MYJ7 566 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 RFXAPO00287 272 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 CBSLP0DN79 551 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 RRM2P31350 389 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 CBSP35520 551 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 CSTF1Q05048 431 aaKnown RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 UMODL1-AS1Q8N2C9 162 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 TTC9BQ8N6N2 239 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 C3orf58Q8NDZ4 430 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 FAM46DQ8NEK8 389 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 TMEM174Q8WUU8 243 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 MYLIPQ8WY64 445 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 NRBF2Q96F24 287 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 HSD3B7Q9H2F3 369 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 CORO2BQ9UQ03 480 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 ANKRD66B4E2M5 251 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 FAM153BP0C7A2 387 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 ARSAP15289 507 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 TNFRSF4P43489 277 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 SCAPQ12770 1279 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 ITIH4Q14624 930 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 FAM153CQ494X1 144 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 GPR149Q86SP6 731 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 RASGRP3Q8IV61 690 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 AGGF1Q8N302 714 aaeCLIP10.07□□□□□ -0.8
USP54-201ENST00000339859 IGSF8Q969P0 613 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 COL26A1Q96A83 441 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 ING2Q9H160 280 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 CCDC189A1A4V9 331 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 EDN1P05305 212 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 LBPP18428 481 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 CCND1P24385 295 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 LSP1P33241 339 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 TCEAL1Q15170 157 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 TSEN2Q8NCE0 465 aaKnown RBP10.07□□□□□ -0.8
USP54-201ENST00000339859 ERP27Q96DN0 273 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 PGM2Q96G03 612 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 TSGA13Q96PP4 275 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 CCT8L2Q96SF2 557 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 MRM3Q9HC36 420 aaKnown RBP10.07□□□□□ -0.8
USP54-201ENST00000339859 TMEM216Q9P0N5 145 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 HNRNPCL2B2RXH8 293 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 CLDN4O14493 209 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 BIRC5O15392 142 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 SH3BGRLO75368 114 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 SLC44A4Q53GD3 710 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 ALFQ53S48 1182 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 RNASEH2BQ5TBB1 312 aaKnown RBP10.07□□□□□ -0.8
USP54-201ENST00000339859 SHKBP1Q8TBC3 707 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 GBP5Q96PP8 586 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 ARFGEF1Q9Y6D6 1849 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 SCAMP1O15126 338 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 AP2A2O94973 939 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 FECHP22830 423 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 ITPKAP23677 461 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 CSTF2P33240 577 aaKnown RBP eCLIP10.07□□□□□ -0.8
USP54-201ENST00000339859 CENPAP49450 140 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 CLCN4P51793 760 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 PLIN5Q00G26 463 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 OGDHQ02218 1023 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 ZNF844Q08AG5 666 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 LSM12Q3MHD2 195 aaKnown RBP10.07□□□□□ -0.8
USP54-201ENST00000339859 PARGQ86W56 976 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 FAM129CQ86XR2 697 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 TMEM139Q8IV31 216 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 SIDT2Q8NBJ9 832 aaKnown RBP10.07□□□□□ -0.8
USP54-201ENST00000339859 SEC16BQ96JE7 1060 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 WDR92Q96MX6 357 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 OSBPL6Q9BZF3 934 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 IRF2BPLQ9H1B7 796 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 C3orf14Q9HBI5 128 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 CDC14AQ9UNH5 594 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 MYH9P35579 1960 aaKnown RBP10.07□□□□□ -0.8
USP54-201ENST00000339859 CDK5RAP2Q96SN8 1893 aa10.07□□□□□ -0.8
USP54-201ENST00000339859 E9PBE3 544 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 KLHL41O60662 606 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 TULP3O75386 442 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 EPN2O95208 641 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 SEMA4FO95754 770 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 NUDT14O95848 222 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 ATP6V1E1P36543 226 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 CLNS1AP54105 237 aaKnown RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 MRPS21P82921 87 aaKnown RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 NFATC2Q13469 925 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 PRKD1Q15139 912 aaPredicted RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 KIAA0319Q5VV43 1072 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 MED27Q6P2C8 311 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 MFSD6LQ8IWD5 586 aa10.06□□□□□ -0.8
USP54-201ENST00000339859 PGAP3Q96FM1 320 aaPredicted RBP10.06□□□□□ -0.8
USP54-201ENST00000339859 CATSPER2Q96P56 530 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms