RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 VTNP04004 478 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 IDNKQ5T6J7 187 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 SLC16A9Q7RTY1 509 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CIDECQ96AQ7 238 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 SPATA13Q96N96 652 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 PCDHGB6Q9Y5F9 930 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CAPN14A8MX76 684 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 KERAO60938 352 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 GSTT2P0CG29 244 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 GDI2P50395 445 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CCNYL2Q5T2Q4 361 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 DNAJB3Q8WWF6 145 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CFAP97Q9P2B7 532 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 MOXD2PA6NHM9 499 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 GRIN3BO60391 1043 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 WFS1O76024 890 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 ITGAVP06756 1048 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 ITGA7Q13683 1181 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 SF1Q15637 639 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 COMTD1Q86VU5 262 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 OR7D4Q8NG98 312 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 NINJ1Q92982 152 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF878C9JN71 531 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 TNFRSF11BO00300 401 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 LRATO95237 230 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF844Q08AG5 666 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 FOXR1Q6PIV2 292 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 KIAA1324Q6UXG2 1013 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 GPR65Q8IYL9 337 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 FAM47BQ8NA70 645 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 OR10G6Q8NH81 332 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 MARCH2Q9P0N8 246 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 TMPRSS11EQ9UL52 423 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CLCA1A8K7I4 914 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 PLGP00747 810 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ITGA2BP08514 1039 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 VARSP26640 1264 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 S100A10P60903 97 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 SYNPOQ8N3V7 929 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 OR2T12Q8NG77 320 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 OR5J2Q8NH18 312 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 HSPA12BQ96MM6 686 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ETNK2Q9NVF9 386 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 VNN2O95498 520 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 TPTEP56180 551 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ADAM15Q13444 863 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 GALNT5Q7Z7M9 940 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 MCOLN2Q8IZK6 566 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF527Q8NB42 609 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 SEC14L1Q92503 715 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ALKBH4Q9NXW9 302 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 FADS3Q9Y5Q0 445 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ADAMTS3O15072 1205 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 PRKD3O94806 890 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 TBX2Q13207 712 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 PGM2Q96G03 612 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF226Q9NYT6 803 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 CACNA1FO60840 1977 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 HDAC3O15379 428 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ATG13O75143 517 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 PRAMEF1O95521 474 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 CAPN13Q6MZZ7 669 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 KCNK18Q7Z418 384 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 UPF1Q92900 1129 aaKnown RBP eCLIP13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 TIFAQ96CG3 184 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 MCMBPQ9BTE3 642 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 FARSBQ9NSD9 589 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 TBC1D14Q9P2M4 693 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 HIF3AQ9Y2N7 669 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 TP73O15350 636 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 IFNA1P01562 189 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 IFNW1P05000 195 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 CASRP41180 1078 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 PUM1Q14671 1186 aaKnown RBP eCLIP13.84□□□□□ -0.192e-6■□□□□ 8.9
CCDC88A-201ENST00000263630 MOXD1Q6UVY6 613 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 NYAP1Q6ZVC0 841 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 BRSK1Q8TDC3 778 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 PSKH2Q96QS6 385 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF347Q96SE7 839 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 OR10A4Q9H209 315 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 EHD4Q9H223 541 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 C19orf12Q9NSK7 152 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ASF1AQ9Y294 204 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 IL1BP01584 269 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 PHC1P78364 1004 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 SLC6A3Q01959 620 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 POMZP3Q6PJE2 187 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF649Q9BS31 505 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 B3GAT2Q9NPZ5 323 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 OVOS2A0A0G2JMS6 1433 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 OVOS2A0A0J9YW53 1432 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 OVOS2Q6IE36 1432 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 AIPO00170 330 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 CABYRO75952 493 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ASGR1P07306 291 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 TFEBP19484 476 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 CRISP1P54107 249 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 DPYSL3Q14195 570 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ATP6V1C2Q8NEY4 427 aa13.84□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF175Q9Y473 711 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms