RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SLC1A5Q15758 541 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 SIRPB2Q5JXA9 342 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 MARK2Q7KZI7 788 aaKnown RBP19.06■□□□□ 0.64
CLN3-260ENST00000637578 GALNT13Q8IUC8 556 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 ARL14Q8N4G2 192 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 DTX3LQ8TDB6 740 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 ZNF578Q96N58 590 aaPredicted RBP19.06■□□□□ 0.64
CLN3-260ENST00000637578 PCDHGA8Q9Y5G5 932 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 FANCGO15287 622 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 ASMTLO95671 621 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 ECEL1O95672 775 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 RBP3P10745 1247 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 ACTR1BP42025 376 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 MAZP56270 477 aaKnown RBP19.06■□□□□ 0.64
CLN3-260ENST00000637578 EIF3EP60228 445 aaKnown RBP19.06■□□□□ 0.64
CLN3-260ENST00000637578 ERVPABLB-1P60509 514 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 ACTR1AP61163 376 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 SLC13A5Q86YT5 568 aaPredicted RBP19.06■□□□□ 0.64
CLN3-260ENST00000637578 TTC30BQ8N4P2 665 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 LIN37Q96GY3 246 aaPredicted RBP19.06■□□□□ 0.64
CLN3-260ENST00000637578 PLEKHG4BQ96PX9 1271 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 FAM118BQ9BPY3 351 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 SPATA16Q9BXB7 569 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 GBA3Q9H227 469 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 ASCL3Q9NQ33 180 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 RSPH14Q9UHP6 348 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 SATB2Q9UPW6 733 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 GPR89AB7ZAQ6 455 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 B4GAT1O43505 415 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 NUAK1O60285 661 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 CEP104O60308 925 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 GPR89BP0CG08 455 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 HLA-DPA1P20036 260 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 CHRNA4P43681 627 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 B3GNT8Q7Z7M8 397 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 CDKL3Q8IVW4 592 aaPredicted RBP19.05■□□□□ 0.64
CLN3-260ENST00000637578 Q8N9G6 341 aaPredicted RBP19.05■□□□□ 0.64
CLN3-260ENST00000637578 SLC46A1Q96NT5 459 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 FERMT1Q9BQL6 677 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 TRIM39Q9HCM9 518 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 HACD3Q9P035 362 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 ATXN10Q9UBB4 475 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 ZNHIT2Q9UHR6 403 aa19.05■□□□□ 0.64
CLN3-260ENST00000637578 R3HDM2Q9Y2K5 976 aaKnown RBP19.05■□□□□ 0.64
CLN3-260ENST00000637578 TMX2-CTNND1H3BSU7 103 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 CCKBRP32239 447 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 ZFP36L1Q07352 338 aaKnown RBP19.04■□□□□ 0.64
CLN3-260ENST00000637578 ANKRD20A2Q5SQ80 823 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 ANKRD20A1Q5TYW2 823 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 ANKRD20A3Q5VUR7 823 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 ALS2CLQ60I27 953 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 ITPRIPL1Q6GPH6 555 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 IPMKQ8NFU5 416 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 WDR36Q8NI36 951 aaKnown RBP19.04■□□□□ 0.64
CLN3-260ENST00000637578 HNRNPLLQ8WVV9 542 aaKnown RBP19.04■□□□□ 0.64
CLN3-260ENST00000637578 PATE1Q8WXA2 126 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 GLYATL1Q969I3 302 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 OSBPL9Q96SU4 736 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 NAPGQ99747 312 aaPredicted RBP19.04■□□□□ 0.64
CLN3-260ENST00000637578 IL17CQ9P0M4 197 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 SNX12Q9UMY4 172 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 PRKAB1Q9Y478 270 aa19.04■□□□□ 0.64
CLN3-260ENST00000637578 CCDC187A0A096LP49 1063 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 F5H423 210 aaPredicted RBP19.03■□□□□ 0.64
CLN3-260ENST00000637578 CHUKO15111 745 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 ZNF189O75820 626 aaPredicted RBP19.03■□□□□ 0.64
CLN3-260ENST00000637578 ANXA9O76027 345 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 SLC25A14O95258 325 aaPredicted RBP19.03■□□□□ 0.64
CLN3-260ENST00000637578 ADRA1AP35348 466 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 GPR3P46089 330 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 C3orf38Q5JPI3 329 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 C19orf48Q6RUI8 117 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 RANBP10Q6VN20 620 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 ADGRG6Q86SQ4 1221 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 KLHDC8BQ8IXV7 354 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 SLC25A41Q8N5S1 370 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 COG1Q8WTW3 980 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 VPS35Q96QK1 796 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 SYNDIG1Q9H7V2 258 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 IL26Q9NPH9 171 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 TMPRSS11EQ9UL52 423 aa19.03■□□□□ 0.64
CLN3-260ENST00000637578 UNC13CQ8NB66 2214 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 CTAGE9A4FU28 777 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 A6NCN8 305 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 RHPN2P1A8MT19 583 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 PPM1DO15297 605 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 GRID2O43424 1007 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 FGGP02679 453 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 SLC4A1P02730 911 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 ZNF8P17098 575 aaPredicted RBP19.02■□□□□ 0.64
CLN3-260ENST00000637578 MLLT3P42568 568 aaPredicted RBP19.02■□□□□ 0.64
CLN3-260ENST00000637578 FASLGP48023 281 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 CLCNKAP51800 687 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 GEMP55040 296 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 ETF1P62495 437 aaKnown RBP19.02■□□□□ 0.64
CLN3-260ENST00000637578 EIF3IQ13347 325 aaKnown RBP19.02■□□□□ 0.64
CLN3-260ENST00000637578 SQSTM1Q13501 440 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 CLPPQ16740 277 aaPredicted RBP19.02■□□□□ 0.64
CLN3-260ENST00000637578 COL28A1Q2UY09 1125 aa19.02■□□□□ 0.64
CLN3-260ENST00000637578 ZDHHC20Q5W0Z9 365 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms