RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 DNAJC6O75061 913 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 KRT38O76015 456 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 UBXN7O94888 489 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 PGLSO95336 258 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 ZNF30P17039 623 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 POU3F2P20265 443 aaPredicted RBP10.01□□□□□ -0.81
TRIM28-210ENST00000597618 TNFAIP3P21580 790 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 LEPRP48357 1165 aaKnown RBP10.01□□□□□ -0.81
TRIM28-210ENST00000597618 CCL11P51671 97 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 UBE2IP63279 158 aaKnown RBP10.01□□□□□ -0.81
TRIM28-210ENST00000597618 CHAF1BQ13112 559 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 ARMC12Q5T9G4 340 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 RFX8Q6ZV50 586 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 PRSS42Q7Z5A4 293 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 SYVN1Q86TM6 617 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 BBS5Q8N3I7 341 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 PNPLA2Q96AD5 504 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 MGME1Q9BQP7 344 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 VPS16Q9H269 839 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 DHX35Q9H5Z1 703 aaKnown RBP10.01□□□□□ -0.81
TRIM28-210ENST00000597618 PDE7BQ9NP56 450 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 GPATCH2LQ9NWQ4 482 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 OGFRQ9NZT2 677 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 PPIL1Q9Y3C6 166 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 PRKAB1Q9Y478 270 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 PCYT1BQ9Y5K3 369 aaPredicted RBP10.01□□□□□ -0.81
TRIM28-210ENST00000597618 F8P00451 2351 aa10.01□□□□□ -0.81
TRIM28-210ENST00000597618 TCRBV5S1A1TA0A578 114 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 ARGFXA6NJG6 315 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 CEACAM4O75871 244 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 ATP1A1P05023 1023 aaKnown RBP10□□□□□ -0.81
TRIM28-210ENST00000597618 TYRP1P17643 537 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 AMD1P17707 334 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 CTPS1P17812 591 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 ERCC2P18074 760 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 PTPN4P29074 926 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 SOX5P35711 763 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 CAPZBP47756 277 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 RPL7AP62424 266 aaKnown RBP10□□□□□ -0.81
TRIM28-210ENST00000597618 RPS15P62841 145 aaKnown RBP10□□□□□ -0.81
TRIM28-210ENST00000597618 PTSQ03393 145 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 PTPRRQ15256 657 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 NR6A1Q15406 480 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 CLEC16AQ2KHT3 1053 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 ZRANB3Q5FWF4 1079 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 DCUN1D2Q6PH85 259 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 RFLNAQ6ZTI6 216 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 TMEM26Q6ZUK4 368 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 MON1BQ7L1V2 547 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 TRIM48Q8IWZ4 208 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 RHOT1Q8IXI2 618 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 RAVER1Q8IY67 606 aaKnown RBP10□□□□□ -0.81
TRIM28-210ENST00000597618 PGBD5Q8N414 524 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 Q8NA96 180 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 TTC13Q8NBP0 860 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 PIH1D2Q8WWB5 315 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 ZDHHC12Q96GR4 267 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 FCRL4Q96PJ5 515 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 PCDHB18PQ96TA0 734 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 AGAP2Q99490 1192 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 RIOK2Q9BVS4 552 aaKnown RBP10□□□□□ -0.81
TRIM28-210ENST00000597618 LUZP4Q9P127 313 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 DNPEPQ9ULA0 475 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 ITPR3Q14573 2671 aa10□□□□□ -0.81
TRIM28-210ENST00000597618 A0A0U1RQS6 177 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 PEX11BO96011 259 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 VIPP01282 170 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 XRCC1P18887 633 aaPredicted RBP9.99□□□□□ -0.81
TRIM28-210ENST00000597618 CLCNKAP51800 687 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 ZNF135P52742 658 aaPredicted RBP9.99□□□□□ -0.81
TRIM28-210ENST00000597618 STC1P52823 247 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 RPS18P62269 152 aaKnown RBP9.99□□□□□ -0.81
TRIM28-210ENST00000597618 PDE1BQ01064 536 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 TUBB3Q13509 450 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 IL10RAQ13651 578 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 NAA30Q147X3 362 aaPredicted RBP9.99□□□□□ -0.81
TRIM28-210ENST00000597618 SYCP1Q15431 976 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 CA9Q16790 459 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 PPP6R3Q5H9R7 873 aaPredicted RBP9.99□□□□□ -0.81
TRIM28-210ENST00000597618 PPP1R15BQ5SWA1 713 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 ERMARDQ5T6L9 678 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 CACHD1Q5VU97 1274 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 SLC6A19Q695T7 634 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 AOPEPQ8N6M6 819 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 MLKLQ8NB16 471 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 NSMCE1Q8WV22 266 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 KLHL6Q8WZ60 621 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 PLEKHG4BQ96PX9 1271 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 KCTD15Q96SI1 283 aaPredicted RBP9.99□□□□□ -0.81
TRIM28-210ENST00000597618 RUFY1Q96T51 708 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 MFRPQ9BY79 579 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 GANQ9H2C0 597 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 RARRES3Q9UL19 164 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 SLC30A1Q9Y6M5 507 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 ZFHX3Q15911 3703 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 CSMD2Q7Z408 3487 aa9.99□□□□□ -0.81
TRIM28-210ENST00000597618 TNRC6AQ8NDV7 1962 aaKnown RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 A0A0J9YYE9 177 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 SSU72P8A0A1W2PR75 194 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 HNRNPRO43390 633 aaKnown RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms