RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 ATP8A2Q9NTI2 1148 aa6.11□□□□□ -1.43
RTF1-204ENST00000558117 LIN7CQ9NUP9 197 aaKnown RBP6.11□□□□□ -1.43
RTF1-204ENST00000558117 IPO11Q9UI26 975 aaKnown RBP6.11□□□□□ -1.43
RTF1-204ENST00000558117 TUBE1Q9UJT0 475 aa6.11□□□□□ -1.43
RTF1-204ENST00000558117 PCDHA10Q9Y5I2 948 aa6.11□□□□□ -1.43
RTF1-204ENST00000558117 ABCA7Q8IZY2 2146 aa6.11□□□□□ -1.43
RTF1-204ENST00000558117 GON4LQ3T8J9 2241 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 NUP205Q92621 2012 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 ZMYM6O95789 1325 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TBC1D3DA0A087WVF3 549 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TBC1D3IA0A087WXS9 549 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TBC1D3EA0A087X179 549 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TBC1D3KA0A087X1G2 549 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TBC1D3BA6NDS4 549 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TBC1D3FA6NER0 549 aaPredicted RBP6.1□□□□□ -1.43
RTF1-204ENST00000558117 AGAP5A6NIR3 686 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TBC1D3LB9A6J9 549 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 E9PAM4 449 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 IPO5O00410 1097 aaKnown RBP6.1□□□□□ -1.43
RTF1-204ENST00000558117 CNTN5O94779 1100 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 IGKV2-30P06310 120 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TMEM191BP0C7N4 346 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TBC1D3HP0C7X1 549 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 POLE2P56282 527 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 LAMB3Q13751 1172 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TIGD6Q17RP2 521 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 GALNTL6Q49A17 601 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 CCDC158Q5M9N0 1113 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TTC22Q5TAA0 569 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 LRCH2Q5VUJ6 765 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TBC1D3GQ6DHY5 549 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TBC1D3CQ6IPX1 549 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 ZNF474Q6S9Z5 364 aaPredicted RBP6.1□□□□□ -1.43
RTF1-204ENST00000558117 GLRX5Q86SX6 157 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 ADGRF3Q8IZF5 1079 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TBC1D3Q8IZP1 549 aaPredicted RBP6.1□□□□□ -1.43
RTF1-204ENST00000558117 HDDC3Q8N4P3 179 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 ANKRD42Q8N9B4 389 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 EXD3Q8N9H8 876 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 TEX19Q8NA77 164 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 ZNF347Q96SE7 839 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 PI4K2AQ9BTU6 479 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 ABHD14AQ9BUJ0 271 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 NUSAP1Q9BXS6 441 aaKnown RBP6.1□□□□□ -1.43
RTF1-204ENST00000558117 FAM49AQ9H0Q0 323 aaPredicted RBP6.1□□□□□ -1.43
RTF1-204ENST00000558117 PLEKHA4Q9H4M7 779 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 MOV10Q9HCE1 1003 aaKnown RBP6.1□□□□□ -1.43
RTF1-204ENST00000558117 ZNF334Q9HCZ1 680 aaPredicted RBP6.1□□□□□ -1.43
RTF1-204ENST00000558117 COL4A2P08572 1712 aa6.1□□□□□ -1.43
RTF1-204ENST00000558117 ZBED9Q6R2W3 1325 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 FANCIQ9NVI1 1328 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 CYP3A7-CYP3A51PA0A087WV96 503 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 EFCAB8A8MWE9 144 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 PIP5K1CO60331 668 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 HEXIM1O94992 359 aaKnown RBP6.09□□□□□ -1.43
RTF1-204ENST00000558117 ALDOAP04075 364 aaKnown RBP6.09□□□□□ -1.43
RTF1-204ENST00000558117 GALTP07902 379 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 CYP21A2P08686 494 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 IGFBP2P18065 325 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 TFEBP19484 476 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 FCARP24071 287 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 CYP3A7P24462 503 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 HALP42357 657 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 PPFIA1Q13136 1202 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 KARSQ15046 597 aaKnown RBP6.09□□□□□ -1.43
RTF1-204ENST00000558117 RPS6KA2Q15349 733 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 ALFQ53S48 1182 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 CCDC70Q6NSX1 233 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 CTR9Q6PD62 1173 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 KIAA1324Q6UXG2 1013 aaKnown RBP6.09□□□□□ -1.43
RTF1-204ENST00000558117 FAM57BQ71RH2 274 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 RAB11FIP2Q7L804 512 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 ADGRF4Q8IZF3 695 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 FAM9BQ8IZU0 186 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 ARL14EPQ8N8R7 260 aaPredicted RBP6.09□□□□□ -1.43
RTF1-204ENST00000558117 BCAS4Q8TDM0 211 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 ELSPBP1Q96BH3 223 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 ZNF48Q96MX3 618 aaPredicted RBP6.09□□□□□ -1.43
RTF1-204ENST00000558117 TRAPPC9Q96Q05 1148 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 MRPL17Q9NRX2 175 aaKnown RBP6.09□□□□□ -1.43
RTF1-204ENST00000558117 PLEKHB1Q9UF11 243 aaPredicted RBP6.09□□□□□ -1.43
RTF1-204ENST00000558117 ZNF215Q9UL58 517 aaPredicted RBP6.09□□□□□ -1.43
RTF1-204ENST00000558117 EML5Q05BV3 1969 aa6.09□□□□□ -1.43
RTF1-204ENST00000558117 WDR81Q562E7 1941 aa6.09□□□□□ -1.44
RTF1-204ENST00000558117 HIVEP3Q5T1R4 2406 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 CCDC171Q6TFL3 1326 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 FAM149AA5PLN7 773 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 F8W810 466 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 M0QZ92 97 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 ZC3H11AO75152 810 aaKnown RBP eCLIP6.08□□□□□ -1.44
RTF1-204ENST00000558117 RPS6KA5O75582 802 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 HSP90AA1P07900 732 aaKnown RBP6.08□□□□□ -1.44
RTF1-204ENST00000558117 ALDOCP09972 364 aaKnown RBP6.08□□□□□ -1.44
RTF1-204ENST00000558117 TGFB3P10600 412 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 SLC16A2P36021 539 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 WDR43Q15061 677 aaKnown RBP eCLIP6.08□□□□□ -1.44
RTF1-204ENST00000558117 POSTNQ15063 836 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 MAPK6Q16659 721 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 ECHDC2Q86YB7 292 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 GPATCH11Q8N954 259 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms