RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ZNF398Q8TD17 642 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 BTN2A2Q8WVV5 523 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 ZNF778Q96MU6 729 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 SERPINB12Q96P63 405 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 VPS35Q96QK1 796 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 CLPBQ9H078 707 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 FAM96AQ9H5X1 160 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 ASB8Q9H765 288 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 BFARQ9NZS9 450 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 ATXN10Q9UBB4 475 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 SPASTQ9UBP0 616 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 APPL1Q9UKG1 709 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 DGKBQ9Y6T7 804 aa17.33■□□□□ 0.36
SHMT2-225ENST00000556798 DCDC2BA2VCK2 349 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 OR51F1A6NGY5 319 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 AQP9O43315 295 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 PRSS56P0CW18 603 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 GRK6P43250 576 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 NPY2RP49146 381 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 ITGA9Q13797 1035 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 TSTD2Q5T7W7 516 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 DBX2Q6ZNG2 339 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 PIP4P1Q86T03 277 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 MPP5Q8N3R9 675 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 OR13J1Q8NGT2 312 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 DTX3LQ8TDB6 740 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 RHBDD1Q8TEB9 315 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 CDKN2AIPNLQ96HQ2 116 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 TBATAQ96M53 351 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 RTKNQ9BST9 563 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 IL22Q9GZX6 179 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 TMEM168Q9H0V1 697 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 OR2AG1Q9H205 316 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 CHRAC1Q9NRG0 131 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 DLL3Q9NYJ7 618 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 PRKAB1Q9Y478 270 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 DCHS1Q96JQ0 3298 aa17.32■□□□□ 0.36
SHMT2-225ENST00000556798 EFCAB8A8MWE9 144 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 AP3B1O00203 1094 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 DNAJC6O75061 913 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 IVLP07476 585 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 GIMD1P0DJR0 217 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 ZNF8P17098 575 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-225ENST00000556798 ITGALP20701 1170 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 SDHBP21912 280 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 KCNA4P22459 653 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 CDKN1CP49918 316 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-225ENST00000556798 NFATC2Q13469 925 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 SKIDA1Q1XH10 827 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 DEFB133Q30KQ1 61 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 INAVAQ3KP66 663 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 ZRANB3Q5FWF4 1079 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 PCID2Q5JVF3 399 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 GPRC6AQ5T6X5 926 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 CES3Q6UWW8 571 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 ADGRG6Q86SQ4 1221 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 CCL4L1Q8NHW4 92 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 TRIM56Q9BRZ2 755 aaKnown RBP17.31■□□□□ 0.36
SHMT2-225ENST00000556798 TRIM39Q9HCM9 518 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 XAB2Q9HCS7 855 aaKnown RBP17.31■□□□□ 0.36
SHMT2-225ENST00000556798 SMOXQ9NWM0 555 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 VPS18Q9P253 973 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 CRLS1Q9UJA2 301 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 PCOLCE2Q9UKZ9 415 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 SNX24Q9Y343 169 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 PLEKHM1Q9Y4G2 1056 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 GPSM3Q9Y4H4 160 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 SLC30A1Q9Y6M5 507 aa17.31■□□□□ 0.36
SHMT2-225ENST00000556798 CCDC162PA2VCL2 907 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 FAM187AA6NFU0 413 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 H7C0S8 307 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 TRIM38O00635 465 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 GIPC1O14908 333 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 SEC31AO94979 1220 aaKnown RBP17.3■□□□□ 0.36
SHMT2-225ENST00000556798 MLNP12872 115 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 NMBRP28336 390 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 RPL21P46778 160 aaKnown RBP17.3■□□□□ 0.36
SHMT2-225ENST00000556798 ITGA8P53708 1063 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 LAMB3Q13751 1172 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 SMAD1Q15797 465 aaKnown RBP17.3■□□□□ 0.36
SHMT2-225ENST00000556798 CASC4Q6P4E1 433 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 CRTC3Q6UUV7 619 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 NLRP9Q7RTR0 991 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 MAATS1Q7Z4T9 603 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 SNX20Q7Z614 316 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 PCGF5Q86SE9 256 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 HOOK3Q86VS8 718 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 GALNT13Q8IUC8 556 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 AGGF1Q8N302 714 aaeCLIP17.3■□□□□ 0.36
SHMT2-225ENST00000556798 DDHD1Q8NEL9 900 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 NAT14Q8WUY8 206 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 HDAC10Q969S8 669 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 CCDC97Q96F63 343 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-225ENST00000556798 SCARF2Q96GP6 870 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-225ENST00000556798 SNF8Q96H20 258 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 PWWP2AQ96N64 755 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 OR2M4Q96R27 311 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 C19orf43Q9BQ61 176 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 DPH5Q9H2P9 285 aa17.3■□□□□ 0.36
SHMT2-225ENST00000556798 ZNHIT2Q9UHR6 403 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms