RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 MFSD1Q9H3U5 465 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 GSTO2Q9H4Y5 243 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 MRPL17Q9NRX2 175 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 VPS4AQ9UN37 437 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 DNAJC15Q9Y5T4 150 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 HCFC2Q9Y5Z7 792 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CROCCQ5TZA2 2017 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 A0A1B0GVM2 712 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 KANSL1LA0AUZ9 987 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 OR2AG2A6NM03 316 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 TRPC5OSA6NMA1 111 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 AP3B1O00203 1094 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 CLDN11O75508 207 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 OR6B1O95007 311 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 PRAMEF1O95521 474 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 STAMBPO95630 424 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 SLC2A4P14672 509 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF37AP17032 561 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 RAP1GDS1P52306 607 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 CDH4P55283 916 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 UFM1P61960 85 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 PLOD1Q02809 727 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 BCL2L1Q07817 233 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 MED21Q13503 144 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 SF1Q15637 639 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 CHRNA6Q15825 494 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 AP5B1Q2VPB7 878 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 TMEM259Q4ZIN3 620 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 FAM26DQ5JW98 314 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF678Q5SXM1 525 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 REP15Q6BDI9 236 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 FAM45BPQ6NSW5 357 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 C16orf89Q6UX73 402 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 Q6ZVU0 165 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 DDX53Q86TM3 631 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 FAM45AQ8TCE6 357 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 TEX37Q96LM6 180 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 FEM1AQ9BSK4 669 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 RTKNQ9BST9 563 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 AARSD1Q9BTE6 412 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 BBS2Q9BXC9 721 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 CLPBQ9H078 707 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 MAGEH1Q9H213 219 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 NSUN3Q9H649 340 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 DONSONQ9NYP3 566 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 WWOXQ9NZC7 414 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 KLQ9UEF7 1012 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 LRRC42Q9Y546 428 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 SQORQ9Y6N5 450 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 PDCD11Q14690 1871 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 RNF103-CHMP3A0A140T963 221 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 LOC285095A0A1B0GVY8 99 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 PRORSD1PA6NEY8 169 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 TARM1B6A8C7 271 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 NRP2O60462 931 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 RNASEH2AO75792 299 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 C8AP07357 584 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 CAPN1P07384 714 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 SNRPB2P08579 225 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 ALDOCP09972 364 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 IMPDH1P20839 514 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 ITPKAP23677 461 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 CST5P28325 142 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 HMOX2P30519 316 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 WASP42768 502 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 MAGEA11P43364 429 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 MAGEA12P43365 314 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF135P52742 658 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 STC1P52823 247 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 IL2P60568 153 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 EIF4EBP2Q13542 120 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 NFYCQ13952 458 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 MRPL58Q14197 206 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 ACAP2Q15057 778 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 ZIK1Q3SY52 487 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 OTUD3Q5T2D3 398 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 RPAINQ86UA6 219 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 ANKRD46Q86W74 232 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 TMEM25Q86YD3 366 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 CLYBLQ8N0X4 340 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 FIBCD1Q8N539 461 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 ENDOVQ8N8Q3 282 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 CHST14Q8NCH0 376 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 RP9Q8TA86 221 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 RAB3IL1Q8TBN0 382 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 STAG3L4Q8TBR4 150 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 ULK4Q96C45 1275 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 NMD3Q96D46 503 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 KLHL32Q96NJ5 620 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 PSKH2Q96QS6 385 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 KLHL4Q9C0H6 718 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 ZBTB26Q9HCK0 441 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 FARSBQ9NSD9 589 aaKnown RBP5.55□□□□□ -1.52
LIMA1-215ENST00000552823 CROTQ9UKG9 612 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 WNT6Q9Y6F9 365 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 BPTFQ12830 3046 aa5.55□□□□□ -1.52
LIMA1-215ENST00000552823 DRGXA6NNA5 263 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 HIDE1A8MVS5 230 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 F8W8V4 182 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 FBP2O00757 339 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms