RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 ARHGAP9Q9BRR9 750 aa13□□□□□ -0.33
RTN3-212ENST00000543123 SPATA16Q9BXB7 569 aa13□□□□□ -0.33
RTN3-212ENST00000543123 SLC25A51Q9H1U9 297 aa13□□□□□ -0.33
RTN3-212ENST00000543123 NHEJ1Q9H9Q4 299 aaPredicted RBP13□□□□□ -0.33
RTN3-212ENST00000543123 MAGEE1Q9HCI5 957 aa13□□□□□ -0.33
RTN3-212ENST00000543123 SARS2Q9NP81 518 aaKnown RBP13□□□□□ -0.33
RTN3-212ENST00000543123 NFKBIL1Q9UBC1 381 aaPredicted RBP13□□□□□ -0.33
RTN3-212ENST00000543123 INTUQ9ULD6 942 aa13□□□□□ -0.33
RTN3-212ENST00000543123 PLEKHM1Q9Y4G2 1056 aa13□□□□□ -0.33
RTN3-212ENST00000543123 BOD1L1Q8NFC6 3051 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 B4E171 279 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 MTSS1O43312 755 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 GRID2O43424 1007 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 SPOPO43791 374 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 DNAJC6O75061 913 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 SLC25A14O95258 325 aaPredicted RBP12.99□□□□□ -0.33
RTN3-212ENST00000543123 SFTPCP11686 197 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 CCL4P13236 92 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 ACP5P13686 325 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 F3P13726 295 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 CSF2RBP32927 897 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 TSPAN7P41732 249 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 NOP2P46087 812 aaKnown RBP12.99□□□□□ -0.33
RTN3-212ENST00000543123 NR2C2P49116 596 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 EPHA4P54764 986 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.99□□□□□ -0.33
RTN3-212ENST00000543123 DCAF12Q5T6F0 453 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 NKAIN2Q5VXU1 208 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 ZNF574Q6ZN55 896 aaPredicted RBP12.99□□□□□ -0.33
RTN3-212ENST00000543123 FAM129CQ86XR2 697 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 DTX1Q86Y01 620 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 CNTD1Q8N815 330 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 LRRN4Q8WUT4 740 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 OLFM3Q96PB7 478 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 TEFMQ96QE5 360 aaKnown RBP12.99□□□□□ -0.33
RTN3-212ENST00000543123 GPR63Q9BZJ6 419 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 TBC1D29Q9UFV1 150 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 CNOT6Q9ULM6 557 aaKnown RBP12.99□□□□□ -0.33
RTN3-212ENST00000543123 PCDHGA4Q9Y5G9 962 aa12.99□□□□□ -0.33
RTN3-212ENST00000543123 OAS3Q9Y6K5 1087 aaKnown RBP12.99□□□□□ -0.33
RTN3-212ENST00000543123 ZFC3H1O60293 1989 aaKnown RBP12.98□□□□□ -0.33
RTN3-212ENST00000543123 A0A0A6YYK5 440 aaPredicted RBP12.98□□□□□ -0.33
RTN3-212ENST00000543123 C3orf70A6NLC5 250 aaPredicted RBP12.98□□□□□ -0.33
RTN3-212ENST00000543123 FADS2P1A8MWK0 482 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 B8ZZF3 427 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 J3QKU1 62 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 NUAK1O60285 661 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 SNX2O60749 519 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 SLC4A1P02730 911 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 FGF3P11487 239 aaPredicted RBP12.98□□□□□ -0.33
RTN3-212ENST00000543123 CDK18Q07002 472 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 PCSK7Q16549 785 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 IYDQ6PHW0 289 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 VASH2Q86V25 355 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 TRAM1L1Q8N609 369 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 ART4Q93070 314 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 TRIB3Q96RU7 358 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 WDR24Q96S15 920 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 ZPBPQ9BS86 351 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 CEP41Q9BYV8 373 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 TSPY26PQ9H489 355 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 TRIM39Q9HCM9 518 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 SPTLC3Q9NUV7 552 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 SLC39A1Q9NY26 324 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 PDP2Q9P2J9 529 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 KCNK6Q9Y257 313 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 ZNF711Q9Y462 761 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 PRKAB1Q9Y478 270 aa12.98□□□□□ -0.33
RTN3-212ENST00000543123 TRBV23OR9-2A0A075B6M9 112 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 PSTPIP1O43586 416 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 VEGFDO43915 354 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 NDST3O95803 873 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 VCLP18206 1134 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 CLCNKAP51800 687 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 DYNLT1P63172 113 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 NFATC2Q13469 925 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 TCEAL1Q15170 157 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 INSCQ1MX18 579 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 ZDHHC20Q5W0Z9 365 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 ALS2CLQ60I27 953 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 KDELC2Q7Z4H8 507 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 TRIM48Q8IWZ4 208 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 IL22RA1Q8N6P7 574 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 TFB1MQ8WVM0 346 aaKnown RBP12.97□□□□□ -0.33
RTN3-212ENST00000543123 NCSTNQ92542 709 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 GLYATL1Q969I3 302 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 RNF25Q96BH1 459 aaPredicted RBP12.97□□□□□ -0.33
RTN3-212ENST00000543123 PLEKHG4BQ96PX9 1271 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 CHP1Q99653 195 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 OR2AG1Q9H205 316 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 OSGEPL1Q9H4B0 414 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 UCK1Q9HA47 277 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 GLOD4Q9HC38 313 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 LUC7LQ9NQ29 371 aaKnown RBP12.97□□□□□ -0.33
RTN3-212ENST00000543123 ATXN10Q9UBB4 475 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 CPNE7Q9UBL6 633 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 SHOC2Q9UQ13 582 aa12.97□□□□□ -0.33
RTN3-212ENST00000543123 HEMK1Q9Y5R4 338 aaPredicted RBP12.97□□□□□ -0.33
RTN3-212ENST00000543123 A6NCN8 305 aa12.96□□□□□ -0.33
RTN3-212ENST00000543123 LILRA5A6NI73 299 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms