RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 C9P02748 559 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 ZNF8P17098 575 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-201ENST00000526271 MAP4P27816 1152 aaKnown RBP14.11□□□□□ -0.15
CPSF1-201ENST00000526271 GARSP41250 739 aaKnown RBP14.11□□□□□ -0.15
CPSF1-201ENST00000526271 CD97P48960 835 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 SPINT3P49223 89 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 CDH6P55285 790 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 LRP8Q14114 963 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 ASIC2Q16515 512 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 QPCTQ16769 361 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 KHDC1Q4VXA5 237 aaKnown RBP14.11□□□□□ -0.15
CPSF1-201ENST00000526271 GAS2L3Q86XJ1 694 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 OR10G6Q8NH81 332 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 EXD1Q8NHP7 514 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 NAP1L5Q96NT1 182 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-201ENST00000526271 CATSPER2Q96P56 530 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 TEFMQ96QE5 360 aaKnown RBP14.11□□□□□ -0.15
CPSF1-201ENST00000526271 RUFY1Q96T51 708 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 AKIRIN1Q9H9L7 192 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-201ENST00000526271 VPS18Q9P253 973 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 ZNF624Q9P2J8 865 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-201ENST00000526271 ATXN10Q9UBB4 475 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 CPNE7Q9UBL6 633 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 ZNHIT2Q9UHR6 403 aa14.11□□□□□ -0.15
CPSF1-201ENST00000526271 KIF1CO43896 1103 aaKnown RBP14.1□□□□□ -0.15
CPSF1-201ENST00000526271 NUAK1O60285 661 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 TIAF1O95411 115 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 ASMTLO95671 621 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 TPM2P07951 284 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 GP1BBP13224 206 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 F3P13726 295 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 BRAFP15056 766 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 ZNF30P17039 623 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 CA5AP35218 305 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 ARL4AP40617 200 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 SLC19A1P41440 591 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 MAPK9P45984 424 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 UQCRFS1P47985 274 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 LEPRP48357 1165 aaKnown RBP14.1□□□□□ -0.15
CPSF1-201ENST00000526271 MLLT10P55197 1068 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 PPP1CAP62136 330 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 BIRC2Q13490 618 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 DPYSL3Q14195 570 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 PAFAH1B3Q15102 231 aaKnown RBP14.1□□□□□ -0.15
CPSF1-201ENST00000526271 BOLA3Q53S33 107 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 C16orf46Q6P387 395 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 CEACAM20Q6UY09 585 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 LUZP1Q86V48 1076 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 ZNF547Q8IVP9 402 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 PQLC3Q8N755 202 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 CNTD1Q8N815 330 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 NIPA2Q8N8Q9 360 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 CCDC112Q8NEF3 446 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 TEKT4Q8WW24 435 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 RPS6KL1Q9Y6S9 549 aa14.1□□□□□ -0.15
CPSF1-201ENST00000526271 CAPN5O15484 640 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-201ENST00000526271 SNX2O60749 519 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 ANKRD34CP0C6C1 535 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 EPHA4P54764 986 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 TAS2R40P59535 323 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 GBE1Q04446 702 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 LAMB3Q13751 1172 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 CRTC2Q53ET0 693 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-201ENST00000526271 GALNT6Q8NCL4 622 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 GPR26Q8NDV2 337 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 LPCAT1Q8NF37 534 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 APOBEC4Q8WW27 367 aaKnown RBP14.09□□□□□ -0.15
CPSF1-201ENST00000526271 RSC1A1Q92681 617 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 AHCYL2Q96HN2 611 aaKnown RBP14.09□□□□□ -0.15
CPSF1-201ENST00000526271 C9orf72Q96LT7 481 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 TRIB3Q96RU7 358 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 TRIM55Q9BYV6 548 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 POLR1EQ9GZS1 481 aaKnown RBP14.09□□□□□ -0.15
CPSF1-201ENST00000526271 THAP2Q9H0W7 228 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 RBM22Q9NW64 420 aaKnown RBP eCLIP14.09□□□□□ -0.15
CPSF1-201ENST00000526271 CROTQ9UKG9 612 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 NENFQ9UMX5 172 aa14.09□□□□□ -0.15
CPSF1-201ENST00000526271 CACNA1DQ01668 2161 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 BLACEA4D250 179 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 LILRA5A6NI73 299 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 MATN3O15232 486 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 ZW10O43264 779 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 GRID2O43424 1007 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 DNAJB5O75953 348 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 TYRP1P17643 537 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 CLCNKAP51800 687 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 ITKQ08881 620 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 MAP7Q14244 749 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 LACTB2Q53H82 288 aaPredicted RBP14.08□□□□□ -0.16
CPSF1-201ENST00000526271 LYSMD3Q7Z3D4 306 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 ADGRG6Q86SQ4 1221 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 TSGA13Q96PP4 275 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 RBSNQ9H1K0 784 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 PCDH9Q9HC56 1237 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 SCINQ9Y6U3 715 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 ESPL1Q14674 2120 aa14.08□□□□□ -0.16
CPSF1-201ENST00000526271 FER1L5A0AVI2 2057 aa14.07□□□□□ -0.16
CPSF1-201ENST00000526271 C1orf232A0A0U1RR37 186 aa14.07□□□□□ -0.16
CPSF1-201ENST00000526271 GOLGA6L3A6NEY3 463 aa14.07□□□□□ -0.16
CPSF1-201ENST00000526271 CHUKO15111 745 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms