RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 AVL9Q8NBF6 648 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 CCDC112Q8NEF3 446 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 OR10G6Q8NH81 332 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 SPATA22Q8NHS9 363 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 USP7Q93009 1102 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 EID2BQ96D98 161 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 AHCYL2Q96HN2 611 aaKnown RBP17.31■□□□□ 0.36
DDX41-217ENST00000515562 TEKT5Q96M29 485 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 GPR63Q9BZJ6 419 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 SARS2Q9NP81 518 aaKnown RBP17.31■□□□□ 0.36
DDX41-217ENST00000515562 WDR70Q9NW82 654 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 SHOC2Q9UQ13 582 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 PRKAB1Q9Y478 270 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 PCYT1BQ9Y5K3 369 aaPredicted RBP17.31■□□□□ 0.36
DDX41-217ENST00000515562 ALG6Q9Y672 507 aa17.31■□□□□ 0.36
DDX41-217ENST00000515562 C9orf172C9J069 976 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 AGRPO00253 132 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 GRID2O43424 1007 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 DUX1O43812 170 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 C1QL1O75973 258 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 LCA5LO95447 670 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 MT-CYBP00156 380 aaPredicted RBP17.3■□□□□ 0.36
DDX41-217ENST00000515562 PIRTP0C851 137 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 THRAP10827 490 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 CSF2RBP32927 897 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 TNNT3P45378 269 aaPredicted RBP17.3■□□□□ 0.36
DDX41-217ENST00000515562 HHEXQ03014 270 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 SPA17Q15506 151 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.3■□□□□ 0.36
DDX41-217ENST00000515562 KAZNQ674X7 775 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 C11orf63Q6NUN7 778 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 ZNF574Q6ZN55 896 aaPredicted RBP17.3■□□□□ 0.36
DDX41-217ENST00000515562 TMC3Q7Z5M5 1100 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 SLC9B2Q86UD5 537 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 CCDC170Q8IYT3 715 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 KATNAL2Q8IYT4 538 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 AGBL5Q8NDL9 886 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 RCBTB1Q8NDN9 531 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 GPR26Q8NDV2 337 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 TTC9Q92623 222 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 P3H4Q92791 437 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 SH3KBP1Q96B97 665 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 FOXJ2Q9P0K8 574 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 TBC1D29Q9UFV1 150 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 KCNK6Q9Y257 313 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.3■□□□□ 0.36
DDX41-217ENST00000515562 PCDHB11Q9Y5F2 797 aa17.3■□□□□ 0.36
DDX41-217ENST00000515562 KIR2DS5A0A0G2JLQ3 304 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 A0A0G2JNG1 304 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 OR5K4A6NMS3 321 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.29■□□□□ 0.36
DDX41-217ENST00000515562 KIR2DS3K7RE56 304 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 PMPCBO75439 489 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 SLC25A14O95258 325 aaPredicted RBP17.29■□□□□ 0.36
DDX41-217ENST00000515562 F3P13726 295 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 PECAM1P16284 738 aaPredicted RBP17.29■□□□□ 0.36
DDX41-217ENST00000515562 CSTF2P33240 577 aaKnown RBP eCLIP17.29■□□□□ 0.36
DDX41-217ENST00000515562 PPM1FP49593 454 aaPredicted RBP17.29■□□□□ 0.36
DDX41-217ENST00000515562 CFHR1Q03591 330 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 KIR2DS5Q14953 304 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 NKAIN2Q5VXU1 208 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 IYDQ6PHW0 289 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 GLYATL1Q969I3 302 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 RBM41Q96IZ5 413 aaKnown RBP17.29■□□□□ 0.36
DDX41-217ENST00000515562 PLEKHG4BQ96PX9 1271 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 VAT1Q99536 393 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 OR2AG1Q9H205 316 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 TRIM39Q9HCM9 518 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 ATXN10Q9UBB4 475 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 SAE1Q9UBE0 346 aaPredicted RBP17.29■□□□□ 0.36
DDX41-217ENST00000515562 FAM153AQ9UHL3 310 aa17.29■□□□□ 0.36
DDX41-217ENST00000515562 AHCTF1Q8WYP5 2266 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 hCG_1818297A0A087WSY0 165 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 A6NCN8 305 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 STMND1H3BQB6 276 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 KALRNO60229 2985 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 ZRANB2O95218 330 aaKnown RBP eCLIP17.28■□□□□ 0.36
DDX41-217ENST00000515562 EML2O95834 649 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 CCL4P13236 92 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 ZNF8P17098 575 aaPredicted RBP17.28■□□□□ 0.36
DDX41-217ENST00000515562 CYLC1P35663 651 aaPredicted RBP17.28■□□□□ 0.36
DDX41-217ENST00000515562 CLCNKAP51800 687 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 EPHA4P54764 986 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 WASHC5Q12768 1159 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 TGIF1Q15583 401 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 TMEM71Q6P5X7 295 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 WDR74Q6RFH5 385 aaPredicted RBP17.28■□□□□ 0.36
DDX41-217ENST00000515562 B4GALNT4Q76KP1 1039 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 ZNF761Q86XN6 746 aaPredicted RBP17.28■□□□□ 0.36
DDX41-217ENST00000515562 DTX1Q86Y01 620 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 CCDC50Q8IVM0 306 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 RCOR2Q8IZ40 523 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 TAAR9Q96RI9 348 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.28■□□□□ 0.36
DDX41-217ENST00000515562 GOLPH3Q9H4A6 298 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 EPB41L1Q9H4G0 881 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 TRABDQ9H4I3 376 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 KLHL8Q9P2G9 620 aaPredicted RBP17.28■□□□□ 0.36
DDX41-217ENST00000515562 PCDHGA3Q9Y5H0 932 aa17.28■□□□□ 0.36
DDX41-217ENST00000515562 PCDHA13Q9Y5I0 950 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms