RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 LAMB3Q13751 1172 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 PYCR3Q53H96 274 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 GUSBP11Q6P575 273 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 CCDC137Q6PK04 289 aaKnown RBP16.22■□□□□ 0.19
SF3A1-209ENST00000496189 PPP1R21Q6ZMI0 780 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 NYAP1Q6ZVC0 841 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 CHST15Q7LFX5 561 aaPredicted RBP16.22■□□□□ 0.19
SF3A1-209ENST00000496189 CREG2Q8IUH2 290 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 TAB3Q8N5C8 712 aaPredicted RBP16.22■□□□□ 0.19
SF3A1-209ENST00000496189 PDCD7Q8N8D1 485 aaKnown RBP16.22■□□□□ 0.19
SF3A1-209ENST00000496189 KYQ8NBH2 561 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 DTX3LQ8TDB6 740 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 ZDHHC1Q8WTX9 485 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 SCARF2Q96GP6 870 aaPredicted RBP16.22■□□□□ 0.19
SF3A1-209ENST00000496189 C16orf45Q96MC5 204 aaPredicted RBP16.22■□□□□ 0.19
SF3A1-209ENST00000496189 DEPDC7Q96QD5 511 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 VPS35Q96QK1 796 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 GORASP1Q9BQQ3 440 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 OR2AG1Q9H205 316 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 ARNT2Q9HBZ2 717 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 TRIM39Q9HCM9 518 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 RAB6BQ9NRW1 208 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 TAAR2Q9P1P5 351 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 CLCA2Q9UQC9 943 aa16.22■□□□□ 0.19
SF3A1-209ENST00000496189 TMEM8BA6NDV4 472 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 GRID2O43424 1007 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 OPA1O60313 960 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 USP12O75317 370 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 MYF5P13349 255 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 VCLP18206 1134 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 CDH17Q12864 832 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 SPARCL1Q14515 664 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 C14orf28Q4W4Y0 310 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 LDLRAP1Q5SW96 308 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 KCTD16Q68DU8 428 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 FAM151BQ6UXP7 276 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 UNQ6494/PRO21346Q6UXR6 183 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 CCNI2Q6ZMN8 369 aaPredicted RBP16.21■□□□□ 0.19
SF3A1-209ENST00000496189 KLHDC8BQ8IXV7 354 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 OR4K2Q8NGD2 314 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 RUNDC3BQ96NL0 473 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 STN1Q9H668 368 aaKnown RBP16.21■□□□□ 0.19
SF3A1-209ENST00000496189 ETNK1Q9HBU6 452 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 SMARCAL1Q9NZC9 954 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 ARL5AQ9Y689 179 aa16.21■□□□□ 0.19
SF3A1-209ENST00000496189 LY6G6EA0A0G2JKS1 128 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 RHPN2P1A8MT19 583 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 CCDC188H7C350 402 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 KMOO15229 486 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 BUD23O43709 281 aaKnown RBP16.2■□□□□ 0.18
SF3A1-209ENST00000496189 NUAK1O60285 661 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 CDK14O94921 469 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 ETS1P14921 441 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 GLB1P16278 677 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 AK4P27144 223 aaPredicted RBP16.2■□□□□ 0.18
SF3A1-209ENST00000496189 AKT1P31749 480 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 RPL22P35268 128 aaKnown RBP16.2■□□□□ 0.18
SF3A1-209ENST00000496189 INSM1Q01101 510 aaPredicted RBP16.2■□□□□ 0.18
SF3A1-209ENST00000496189 SEPT6Q14141 434 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 SPIDRQ14159 915 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 INSCQ1MX18 579 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 LRRTM4Q86VH4 590 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 CACTIN-AS1Q8N1I8 211 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 CCL4L1Q8NHW4 92 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 C19orf43Q9BQ61 176 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 CCDC3Q9BQI4 270 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 IL26Q9NPH9 171 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 CNOT6Q9ULM6 557 aaKnown RBP16.2■□□□□ 0.18
SF3A1-209ENST00000496189 OAS3Q9Y6K5 1087 aaKnown RBP16.2■□□□□ 0.18
SF3A1-209ENST00000496189 U3KQA8 63 aa16.2■□□□□ 0.18
SF3A1-209ENST00000496189 ARID1BQ8NFD5 2236 aaPredicted RBP16.19■□□□□ 0.18
SF3A1-209ENST00000496189 FAM149AA5PLN7 773 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 AP3B1O00203 1094 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 NUDT21O43809 227 aaKnown RBP16.19■□□□□ 0.18
SF3A1-209ENST00000496189 DNAJC6O75061 913 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 TCEA3O75764 348 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 PRAMEF1O95521 474 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 ECEL1O95672 775 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 MT-CO3P00414 261 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 KRT14P02533 472 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 APRTP07741 180 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 RALBP11234 206 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 ACP5P13686 325 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 ITGALP20701 1170 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 BASP1P80723 227 aaKnown RBP16.19■□□□□ 0.18
SF3A1-209ENST00000496189 OLIG2Q13516 323 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 SEMA5AQ13591 1074 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 ATP13A5Q4VNC0 1218 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 KCTD11Q693B1 232 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 OGFOD3Q6PK18 319 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 AVL9Q8NBF6 648 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 GPR156Q8NFN8 814 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 ZNF398Q8TD17 642 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 CCDC74AQ96AQ1 378 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 ULK4Q96C45 1275 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 CNTNAP3BQ96NU0 1288 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 CNTNAP3Q9BZ76 1288 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 ARFGAP3Q9NP61 516 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 LRIT1Q9P2V4 623 aa16.19■□□□□ 0.18
SF3A1-209ENST00000496189 ATXN10Q9UBB4 475 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms