RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 AGPAT1Q99943 283 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 ZNF768Q9H5H4 540 aaKnown RBP16.97■□□□□ 0.31
VIM-204ENST00000478746 RMI1Q9H9A7 625 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 LHX9Q9NQ69 397 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 OGFRQ9NZT2 677 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 RCOR3Q9P2K3 495 aaPredicted RBP16.97■□□□□ 0.31
VIM-204ENST00000478746 GOLGA6L3A6NEY3 463 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 C21orf140B9A014 251 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 PRPSAP2O60256 369 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 RASSF9O75901 435 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 RNF8O76064 485 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 UBXN7O94888 489 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 FGF5P12034 268 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 DCTP40126 519 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 CCL11P51671 97 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 ZNF135P52742 658 aaPredicted RBP16.96■□□□□ 0.31
VIM-204ENST00000478746 STC1P52823 247 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 EPHB1P54762 984 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 DPYSQ14117 519 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 INPP5JQ15735 1006 aaPredicted RBP16.96■□□□□ 0.31
VIM-204ENST00000478746 MARC1Q5VT66 337 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 ACAD10Q6JQN1 1059 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 PPP1R3BQ86XI6 285 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 THAP4Q8WY91 577 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 SEC14L1Q92503 715 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 PLEKHG4BQ96PX9 1271 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 ACTL8Q9H568 366 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 UCK1Q9HA47 277 aa16.96■□□□□ 0.31
VIM-204ENST00000478746 CNOT6Q9ULM6 557 aaKnown RBP16.96■□□□□ 0.31
VIM-204ENST00000478746 PCDHGA9Q9Y5G4 932 aaKnown RBP16.96■□□□□ 0.31
VIM-204ENST00000478746 HIVEP3Q5T1R4 2406 aa16.96■□□□□ 0.3
VIM-204ENST00000478746 A0A0J9YYE9 177 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 TCP11X1B4DZS4 312 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 GRID2O43424 1007 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 MAFKO60675 156 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 SORBS2O94875 1100 aaKnown RBP16.95■□□□□ 0.3
VIM-204ENST00000478746 TRBC1P01850 177 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 XRCC1P18887 633 aaPredicted RBP16.95■□□□□ 0.3
VIM-204ENST00000478746 MMP13P45452 471 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 LEPRP48357 1165 aaKnown RBP16.95■□□□□ 0.3
VIM-204ENST00000478746 UBE2IP63279 158 aaKnown RBP16.95■□□□□ 0.3
VIM-204ENST00000478746 MRPL49Q13405 166 aaKnown RBP16.95■□□□□ 0.3
VIM-204ENST00000478746 MAMLD1Q13495 774 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 DPCR1Q3MIW9 517 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.95■□□□□ 0.3
VIM-204ENST00000478746 TMEM26Q6ZUK4 368 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 PHYKPLQ8IUZ5 450 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 PSTKQ8IV42 348 aaKnown RBP16.95■□□□□ 0.3
VIM-204ENST00000478746 ZWILCHQ9H900 591 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 MLXIPLQ9NP71 852 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 ACSS2Q9NR19 701 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 PARVAQ9NVD7 372 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 SLC30A1Q9Y6M5 507 aa16.95■□□□□ 0.3
VIM-204ENST00000478746 FZD6O60353 706 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 CLDN1O95832 211 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 VIPP01282 170 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 AMPD1P23109 780 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 MIPP30301 263 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 ITKQ08881 620 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 UGT8Q16880 541 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 FKBP15Q5T1M5 1219 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 CACHD1Q5VU97 1274 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 CYB5D1Q6P9G0 228 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 TMCO3Q6UWJ1 677 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 TRIM48Q8IWZ4 208 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 GPR87Q9BY21 358 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 SLC29A3Q9BZD2 475 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 ING2Q9H160 280 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 NT5MQ9NPB1 228 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 IGSF5Q9NSI5 407 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 MAP10Q9P2G4 905 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 DNPEPQ9ULA0 475 aa16.94■□□□□ 0.3
VIM-204ENST00000478746 H3BRJ5 948 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 KIF1CO43896 1103 aaKnown RBP16.93■□□□□ 0.3
VIM-204ENST00000478746 NUAK1O60285 661 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 LRCH4O75427 683 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 CLDN7O95471 211 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 TPM2P07951 284 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 VARSP26640 1264 aaKnown RBP16.93■□□□□ 0.3
VIM-204ENST00000478746 PTPN4P29074 926 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 CLCNKAP51800 687 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 CDH6P55285 790 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 CHAF1BQ13112 559 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 PAPD7Q5XG87 772 aaKnown RBP16.93■□□□□ 0.3
VIM-204ENST00000478746 CPZQ66K79 652 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 CYP4V2Q6ZWL3 525 aaPredicted RBP16.93■□□□□ 0.3
VIM-204ENST00000478746 RAVER1Q8IY67 606 aaKnown RBP16.93■□□□□ 0.3
VIM-204ENST00000478746 ATPAF2Q8N5M1 289 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 AOPEPQ8N6M6 819 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 KLHL6Q8WZ60 621 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 PCMTD1Q96MG8 357 aaPredicted RBP16.93■□□□□ 0.3
VIM-204ENST00000478746 WDR24Q96S15 920 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 BRD8Q9H0E9 1235 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 CARD9Q9H257 536 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 OSGEPL1Q9H4B0 414 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 PDE7BQ9NP56 450 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 SLAMF7Q9NQ25 335 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 KLC4Q9NSK0 619 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 ETNK2Q9NVF9 386 aa16.93■□□□□ 0.3
VIM-204ENST00000478746 SCHIP1Q9P0W5 487 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms