RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 EML2O95834 649 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 ACP5P13686 325 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 SLC5A2P31639 672 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 ETV5P41161 510 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 ZNF75DP51815 510 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 MAPK10P53779 464 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 SRSF6Q13247 344 aaKnown RBP15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 LRP8Q14114 963 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 NR1D2Q14995 579 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 TGIF1Q15583 401 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 TFDP3Q5H9I0 405 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 ZNF648Q5T619 568 aaPredicted RBP15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 NKAIN2Q5VXU1 208 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 CCDC70Q6NSX1 233 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 DAAM2Q86T65 1068 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 ZNF761Q86XN6 746 aaPredicted RBP15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 KATNAL2Q8IYT4 538 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 GPR26Q8NDV2 337 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 SLC37A2Q8TED4 501 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 P3H4Q92791 437 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 TADA1Q96BN2 335 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 MED8Q96G25 268 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 TEKT5Q96M29 485 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 CCNL2Q96S94 520 aaPredicted RBP15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 MAGEE1Q9HCI5 957 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 LUC7LQ9NQ29 371 aaKnown RBP15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 KLHL8Q9P2G9 620 aaPredicted RBP15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 KCNK6Q9Y257 313 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 SOWAHDA6NJG2 315 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 ZRANB2O95218 330 aaKnown RBP eCLIP15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 NDST3O95803 873 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 NFKB1P19838 968 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 CD68P34810 354 aaPredicted RBP15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 GPR3P46089 330 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 WASHC5Q12768 1159 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 C16orf72Q14CZ0 275 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 NOMO1Q15155 1222 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 SLC14A2Q15849 920 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 C11orf63Q6NUN7 778 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 RCBTB1Q8NDN9 531 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 KRT35Q92764 455 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 RBM41Q96IZ5 413 aaKnown RBP15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 CMKLR1Q99788 373 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 RBSNQ9H1K0 784 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 KCNK4Q9NYG8 393 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 ATXN10Q9UBB4 475 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 PCDHGA7Q9Y5G6 932 aa15.56■□□□□ 0.08
CCDC88B-205ENST00000472524 SNX2O60749 519 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 SLC25A14O95258 325 aaPredicted RBP15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 ZNF8P17098 575 aaPredicted RBP15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 CD1CP29017 333 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 DCDC1P59894 354 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 ZNF574Q6ZN55 896 aaPredicted RBP15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 TMC3Q7Z5M5 1100 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 RCOR2Q8IZ40 523 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 TRAM1L1Q8N609 369 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 TMEM159Q96B96 161 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 CCDC74BQ96LY2 380 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 QKIQ96PU8 341 aaKnown RBP eCLIP15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 SLC38A3Q99624 504 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 ZSCAN5AQ9BUG6 496 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 HEMGNQ9BXL5 484 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 OR2AG1Q9H205 316 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 CARD9Q9H257 536 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 RMI1Q9H9A7 625 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 BPIFA1Q9NP55 256 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 AKAP7Q9P0M2 348 aaPredicted RBP15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 TBC1D29Q9UFV1 150 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 FAM153AQ9UHL3 310 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 SPO11Q9Y5K1 396 aa15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 EPN1Q9Y6I3 576 aaPredicted RBP15.55■□□□□ 0.08
CCDC88B-205ENST00000472524 ZNF106Q9H2Y7 1883 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 IGHV1OR21-1A0A087WYE8 117 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 PRAMEF33A0A0G2JMD5 474 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 IGHV5-10-1A0A0J9YXX1 117 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 AURKAO14965 403 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 MTSS1O43312 755 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 GRID2O43424 1007 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 NUAK1O60285 661 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 PRAMEF10O60809 474 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 NDUFA10O95299 355 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 BPIP17213 487 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 MPSTP25325 297 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 CSF2RBP32927 897 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 TNNT3P45378 269 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 FASLGP48023 281 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 NAP1L1P55209 391 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 WNT3AP56704 352 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 NFATC2Q13469 925 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 PLA2G4EQ3MJ16 856 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 CCDC181Q5TID7 509 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 CRTC3Q6UUV7 619 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 KDELC1Q6UW63 502 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 PID1Q7Z2X4 250 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 PHYKPLQ8IUZ5 450 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 ZNF567Q8N184 647 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 SFRP1Q8N474 314 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 SLC25A41Q8N5S1 370 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 EXD3Q8N9H8 876 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms