RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 FAM46DQ8NEK8 389 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 OR6C4Q8NGE1 309 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 MAPK15Q8TD08 544 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 C1orf54Q8WWF1 131 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 GLYATL1Q969I3 302 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 C19orf43Q9BQ61 176 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 TBL1YQ9BQ87 522 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 ABCG4Q9H172 646 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 LRRC40Q9H9A6 602 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 SIRPGQ9P1W8 387 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 PKP3Q9Y446 797 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 JRKLQ9Y4A0 524 aa17.18■□□□□ 0.34
USP39-208ENST00000455732 CASC3O15234 703 aaKnown RBP17.17■□□□□ 0.34
USP39-208ENST00000455732 NOBOXO60393 691 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 AP2A1O95782 977 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 FGGP02679 453 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 ATP1A1P05023 1023 aaKnown RBP17.17■□□□□ 0.34
USP39-208ENST00000455732 SPAM1P38567 509 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 CTBSQ01459 385 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 OLIG2Q13516 323 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 TAF1AQ15573 450 aaPredicted RBP17.17■□□□□ 0.34
USP39-208ENST00000455732 C17orf82Q86X59 251 aaPredicted RBP17.17■□□□□ 0.34
USP39-208ENST00000455732 BRSK1Q8TDC3 778 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 DEPDC7Q96QD5 511 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 APOL2Q9BQE5 337 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 BPIFA1Q9NP55 256 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 IL26Q9NPH9 171 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 GULP1Q9UBP9 304 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 RAXQ9Y2V3 346 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 PCDHB1Q9Y5F3 818 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 ST14Q9Y5Y6 855 aa17.17■□□□□ 0.34
USP39-208ENST00000455732 ERI2A8K979 691 aaKnown RBP17.16■□□□□ 0.34
USP39-208ENST00000455732 PSMD3O43242 534 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 NUAK1O60285 661 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 SLC25A14O95258 325 aaPredicted RBP17.16■□□□□ 0.34
USP39-208ENST00000455732 ASMTLO95671 621 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 PDE1BQ01064 536 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 HLTFQ14527 1009 aaKnown RBP eCLIP17.16■□□□□ 0.34
USP39-208ENST00000455732 C14orf28Q4W4Y0 310 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 MARK2Q7KZI7 788 aaKnown RBP17.16■□□□□ 0.34
USP39-208ENST00000455732 WDR48Q8TAF3 677 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 CCDC3Q9BQI4 270 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 SUDS3Q9H7L9 328 aaPredicted RBP17.16■□□□□ 0.34
USP39-208ENST00000455732 TRIM39Q9HCM9 518 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 SPATS2LQ9NUQ6 558 aaKnown RBP17.16■□□□□ 0.34
USP39-208ENST00000455732 SMOXQ9NWM0 555 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 TAAR2Q9P1P5 351 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 ATXN10Q9UBB4 475 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 RABGEF1Q9UJ41 708 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 ZNF148Q9UQR1 794 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 GPSM3Q9Y4H4 160 aa17.16■□□□□ 0.34
USP39-208ENST00000455732 LOC400499M0QZD8 3231 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 GLYATL1P3A0A0U1RQE8 302 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 C2orf81A6NN90 581 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 GAPDHSO14556 408 aaPredicted RBP17.15■□□□□ 0.34
USP39-208ENST00000455732 CEP104O60308 925 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 USP12O75317 370 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 CSO75390 466 aaKnown RBP17.15■□□□□ 0.34
USP39-208ENST00000455732 TCEA3O75764 348 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 CRTAMO95727 393 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 PNLIPP16233 465 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 LPOP22079 712 aaPredicted RBP17.15■□□□□ 0.34
USP39-208ENST00000455732 AK4P27144 223 aaPredicted RBP17.15■□□□□ 0.34
USP39-208ENST00000455732 FDFT1P37268 417 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 SPARCL1Q14515 664 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 ISXQ2M1V0 245 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 ATP13A5Q4VNC0 1218 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 CERCAMQ5T4B2 595 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 ADGRG6Q86SQ4 1221 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 SFTPA2Q8IWL1 248 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 DPEP2Q9H4A9 486 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 HOMER3Q9NSC5 361 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 APPL1Q9UKG1 709 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 TMPRSS11EQ9UL52 423 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 DRG1Q9Y295 367 aaKnown RBP17.15■□□□□ 0.34
USP39-208ENST00000455732 PCYT1BQ9Y5K3 369 aaPredicted RBP17.15■□□□□ 0.34
USP39-208ENST00000455732 ARL5AQ9Y689 179 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 AK5Q9Y6K8 562 aa17.15■□□□□ 0.34
USP39-208ENST00000455732 B4DGG1 531 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 NTN3O00634 580 aaPredicted RBP17.14■□□□□ 0.33
USP39-208ENST00000455732 CHUKO15111 745 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 STX7O15400 261 aaKnown RBP17.14■□□□□ 0.33
USP39-208ENST00000455732 NUDT21O43809 227 aaKnown RBP17.14■□□□□ 0.33
USP39-208ENST00000455732 VEGFDO43915 354 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 IFNB1P01574 187 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 GLB1P16278 677 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 ZNF8P17098 575 aaPredicted RBP17.14■□□□□ 0.33
USP39-208ENST00000455732 CXCR5P32302 372 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 ACTN2P35609 894 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 ACTR1BP42025 376 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 ZNF140P52738 457 aaPredicted RBP17.14■□□□□ 0.33
USP39-208ENST00000455732 ACTR1AP61163 376 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 SNX1Q13596 522 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 ITGA9Q13797 1035 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 LONRF2Q1L5Z9 754 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 SLC30A9Q6PML9 568 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 LINC00523Q86TU6 105 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 RASGEF1CQ8N431 466 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 CCDC89Q8N998 374 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 ZDHHC1Q8WTX9 485 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms