RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SPAM1P38567 509 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 MAZP56270 477 aaKnown RBP15.04■□□□□ -0
LIMS3-201ENST00000437679 CCL7P80098 99 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 RTP5Q14D33 572 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 P3H1Q32P28 736 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 CHST15Q7LFX5 561 aaPredicted RBP15.04■□□□□ -0
LIMS3-201ENST00000437679 CCNJLQ8IV13 435 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 SFTPA2Q8IWL1 248 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 Q8N9G6 341 aaPredicted RBP15.04■□□□□ -0
LIMS3-201ENST00000437679 VPS35Q96QK1 796 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 GFM1Q96RP9 751 aaKnown RBP15.04■□□□□ -0
LIMS3-201ENST00000437679 TBL1YQ9BQ87 522 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 TMEM121Q9BTD3 319 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 LRRN3Q9H3W5 708 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 ARFGAP3Q9NP61 516 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 FEZ2Q9UHY8 353 aaPredicted RBP15.04■□□□□ -0
LIMS3-201ENST00000437679 RABGEF1Q9UJ41 708 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 APPL1Q9UKG1 709 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 PRKAB1Q9Y478 270 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 PCDHB1Q9Y5F3 818 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 ST14Q9Y5Y6 855 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 RNF215Q9Y6U7 377 aa15.04■□□□□ -0
LIMS3-201ENST00000437679 KMT2BQ9UMN6 2715 aaPredicted RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 C2orf81A6NN90 581 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 SRRM3A6NNA2 597 aaPredicted RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 RHPN2P1A8MT19 583 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 NTN3O00634 580 aaPredicted RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 ZW10O43264 779 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 BUD23O43709 281 aaKnown RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 VEGFDO43915 354 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 RPLP0P05388 317 aaKnown RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 ACP5P13686 325 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 ZNF8P17098 575 aaPredicted RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 LPOP22079 712 aaPredicted RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 STIP1P31948 543 aaKnown RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 TAF1AQ15573 450 aaPredicted RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 ATP13A5Q4VNC0 1218 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 ZNF648Q5T619 568 aaPredicted RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 FAM151BQ6UXP7 276 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 ADGRG6Q86SQ4 1221 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 C17orf82Q86X59 251 aaPredicted RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 NAGSQ8N159 534 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 ARL14Q8N4G2 192 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 GDAP1Q8TB36 358 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 DTX3LQ8TDB6 740 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 ATG4AQ8WYN0 398 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 IL26Q9NPH9 171 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 PCYT1BQ9Y5K3 369 aaPredicted RBP15.03■□□□□ -0
LIMS3-201ENST00000437679 WDFY3Q8IZQ1 3526 aa15.03■□□□□ -0
LIMS3-201ENST00000437679 FREM2Q5SZK8 3169 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 GLYATL1P3A0A0U1RQE8 302 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 TAF4O00268 1085 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 PSMD3O43242 534 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 LIASO43766 372 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 CRTAMO95727 393 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 ACTN2P35609 894 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 GDF10P55107 478 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 PDE1BQ01064 536 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 OLIG2Q13516 323 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 ITGA9Q13797 1035 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 GTF2H3Q13889 308 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 SPARCL1Q14515 664 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 CHRNA6Q15825 494 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 SPRED1Q7Z699 444 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 BRSK1Q8TDC3 778 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 PATE1Q8WXA2 126 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 LRRC40Q9H9A6 602 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 ZNF148Q9UQR1 794 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 KCNK6Q9Y257 313 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 ENTPD2Q9Y5L3 495 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 ARL5AQ9Y689 179 aa15.02■□□□□ -0
LIMS3-201ENST00000437679 A0A1W2PQM1 296 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 D6RAR5 112 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 TMX2-CTNND1H3BSU7 103 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 CHUKO15111 745 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 KMOO15229 486 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 CASC3O15234 703 aaKnown RBP15.01□□□□□ -0.01
LIMS3-201ENST00000437679 MTX2O75431 263 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 CDK14O94921 469 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 METTL18O95568 372 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 MPOP05164 745 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 SLC2A4P14672 509 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 GABREP78334 506 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 SNX1Q13596 522 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 OASLQ15646 514 aaKnown RBP15.01□□□□□ -0.01
LIMS3-201ENST00000437679 CRTC3Q6UUV7 619 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 ZNF438Q7Z4V0 828 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 LRRTM4Q86VH4 590 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 KLHDC8BQ8IXV7 354 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 LSMEM2Q8N112 164 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 MAIP1Q8WWC4 291 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 C1orf54Q8WWF1 131 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 ANP32BQ92688 251 aaKnown RBP15.01□□□□□ -0.01
LIMS3-201ENST00000437679 RTP4Q96DX8 246 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 ATXN7L3BQ96GX2 97 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 TTC25Q96NG3 672 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 TMEM74Q96NL1 305 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 ZCCHC2Q9C0B9 1178 aaKnown RBP15.01□□□□□ -0.01
LIMS3-201ENST00000437679 ARNT2Q9HBZ2 717 aa15.01□□□□□ -0.01
LIMS3-201ENST00000437679 TMPRSS11EQ9UL52 423 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 139.4 ms