RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ANKRD20A3Q5VUR7 823 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 CHST15Q7LFX5 561 aaPredicted RBP18.87■□□□□ 0.61
SF3A1-202ENST00000411423 WDR48Q8TAF3 677 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 CCDC110Q8TBZ0 833 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 HES6Q96HZ4 224 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 FICDQ9BVA6 458 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 OR2AG1Q9H205 316 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 TBC1D29Q9UFV1 150 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 KCNK6Q9Y257 313 aa18.87■□□□□ 0.61
SF3A1-202ENST00000411423 ZFC3H1O60293 1989 aaKnown RBP18.86■□□□□ 0.61
SF3A1-202ENST00000411423 AGRPO00253 132 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 KCNN4O15554 427 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 NUAK1O60285 661 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 ACP5P13686 325 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 ADRA1AP35348 466 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 MPP3Q13368 585 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 NR1D2Q14995 579 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 ZNF569Q5MCW4 686 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 DARS2Q6PI48 645 aaKnown RBP18.86■□□□□ 0.61
SF3A1-202ENST00000411423 MICALCLQ6ZW33 695 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 CDKL3Q8IVW4 592 aaPredicted RBP18.86■□□□□ 0.61
SF3A1-202ENST00000411423 FGF11Q92914 225 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 GLYATL1Q969I3 302 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 APOL2Q9BQE5 337 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 ZSCAN5AQ9BUG6 496 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 IL17CQ9P0M4 197 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 SLC23A2Q9UGH3 650 aa18.86■□□□□ 0.61
SF3A1-202ENST00000411423 A6NCN8 305 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 TJP3O95049 919 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 SLC25A14O95258 325 aaPredicted RBP18.85■□□□□ 0.61
SF3A1-202ENST00000411423 HGFP14210 728 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 HMGCLP35914 325 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 CFHR1Q03591 330 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 ZFP36L1Q07352 338 aaKnown RBP18.85■□□□□ 0.61
SF3A1-202ENST00000411423 MSLNQ13421 630 aaPredicted RBP18.85■□□□□ 0.61
SF3A1-202ENST00000411423 ATP13A5Q4VNC0 1218 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 CCDC70Q6NSX1 233 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 FOXR1Q6PIV2 292 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 ZNF574Q6ZN55 896 aaPredicted RBP18.85■□□□□ 0.61
SF3A1-202ENST00000411423 ZNF761Q86XN6 746 aaPredicted RBP18.85■□□□□ 0.61
SF3A1-202ENST00000411423 SLITRK4Q8IW52 837 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 BLOC1S5Q8TDH9 187 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 SLC37A2Q8TED4 501 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 SLC46A1Q96NT5 459 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 CARD9Q9H257 536 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 SEMA6CQ9H3T2 930 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 RDH14Q9HBH5 336 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 EPB41L5Q9HCM4 733 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 TRIM39Q9HCM9 518 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 IL26Q9NPH9 171 aa18.85■□□□□ 0.61
SF3A1-202ENST00000411423 CHUKO15111 745 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 GRID2O43424 1007 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 HLA-DPA1P20036 260 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 CD1CP29017 333 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 ACTN2P35609 894 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 INHBCP55103 352 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 GDF10P55107 478 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 CCDC173Q0VFZ6 552 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 LRP8Q14114 963 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 PLA2G4EQ3MJ16 856 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 NKAIN2Q5VXU1 208 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 IGF2-ASQ6U949 168 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 CRTC3Q6UUV7 619 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 RANBP10Q6VN20 620 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 ZNF547Q8IVP9 402 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 KLHDC8BQ8IXV7 354 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 SYCE1Q8N0S2 351 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 SFRP1Q8N474 314 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 GRAMD1AQ96CP6 724 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 LIN37Q96GY3 246 aaPredicted RBP18.84■□□□□ 0.61
SF3A1-202ENST00000411423 NAF1Q96HR8 494 aaKnown RBP18.84■□□□□ 0.61
SF3A1-202ENST00000411423 ZNF578Q96N58 590 aaPredicted RBP18.84■□□□□ 0.61
SF3A1-202ENST00000411423 SPATA13Q96N96 652 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 PLEKHG4BQ96PX9 1271 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 NUDT22Q9BRQ3 303 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 KCTD3Q9Y597 815 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 PCDHGA8Q9Y5G5 932 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 ARL5AQ9Y689 179 aa18.84■□□□□ 0.61
SF3A1-202ENST00000411423 CCDC187A0A096LP49 1063 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 RHPN2P1A8MT19 583 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 CDRT15L2A8MXV6 281 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 MIF4GDA9UHW6 222 aaKnown RBP18.83■□□□□ 0.6
SF3A1-202ENST00000411423 UGT1A9O60656 530 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 HOXB3P14651 431 aaPredicted RBP18.83■□□□□ 0.6
SF3A1-202ENST00000411423 UGT1A6P19224 532 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 UGT1A1P22309 533 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 UGT1A4P22310 534 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 ALDH4A1P30038 563 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 CCKBRP32239 447 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 CSF2RBP32927 897 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 UGT1A3P35503 534 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 UGT1A5P35504 534 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 GEMP55040 296 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 SPARCL1Q14515 664 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 CHRNA6Q15825 494 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 AMZ1Q400G9 498 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.83■□□□□ 0.6
SF3A1-202ENST00000411423 PDPK2PQ6A1A2 396 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 DENND5AQ6IQ26 1287 aa18.83■□□□□ 0.6
SF3A1-202ENST00000411423 USP53Q70EK8 1073 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms