RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 EMCNQ9ULC0 261 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 DMTF1Q9Y222 760 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 MTO1Q9Y2Z2 717 aaKnown RBP10.16□□□□□ -0.78
VPS53-202ENST00000389040 FADS3Q9Y5Q0 445 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 ZNF318Q5VUA4 2279 aa10.16□□□□□ -0.78
VPS53-202ENST00000389040 LATO43561 262 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 FOXD2O60548 495 aaPredicted RBP10.15□□□□□ -0.78
VPS53-202ENST00000389040 SNNO75324 88 aaPredicted RBP10.15□□□□□ -0.78
VPS53-202ENST00000389040 MMP2P08253 660 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 TIMP2P16035 220 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 NMBRP28336 390 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 TYK2P29597 1187 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 ACSL1P33121 698 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 CD86P42081 329 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 KCNJ2P63252 427 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 DSC2Q02487 901 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 AGERQ15109 404 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 INSCQ1MX18 579 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 TMEM52BQ4KMG9 183 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 TAF1BQ53T94 588 aaPredicted RBP10.15□□□□□ -0.78
VPS53-202ENST00000389040 LAIR1Q6GTX8 287 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 USP45Q70EL2 814 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 PARS2Q7L3T8 475 aaKnown RBP10.15□□□□□ -0.78
VPS53-202ENST00000389040 CCDC91Q7Z6B0 441 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 MTDHQ86UE4 582 aaKnown RBP10.15□□□□□ -0.78
VPS53-202ENST00000389040 PARP9Q8IXQ6 854 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 DCLK2Q8N568 766 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 RLN3Q8WXF3 142 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 MCCC1Q96RQ3 725 aaPredicted RBP10.15□□□□□ -0.78
VPS53-202ENST00000389040 C19orf43Q9BQ61 176 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 FICDQ9BVA6 458 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 GPR174Q9BXC1 333 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 TMEM120AQ9BXJ8 343 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 KCNK13Q9HB14 408 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 SNX15Q9NRS6 342 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 MBD1Q9UIS9 605 aaPredicted RBP10.15□□□□□ -0.78
VPS53-202ENST00000389040 ZFP69BQ9UJL9 534 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 PCDHB9Q9Y5E1 797 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 PCDHGC4Q9Y5F7 938 aa10.15□□□□□ -0.78
VPS53-202ENST00000389040 TBC1D3DA0A087WVF3 549 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 TBC1D3IA0A087WXS9 549 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 TBC1D3EA0A087X179 549 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 TBC1D3KA0A087X1G2 549 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 LOC285095A0A1B0GVY8 99 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 TBC1D3FA6NER0 549 aaPredicted RBP10.15□□□□□ -0.79
VPS53-202ENST00000389040 PRR5-ARHGAP8B1AHC4 643 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 ANKRD66B4E2M5 251 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 TBC1D3LB9A6J9 549 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 PSMD11O00231 422 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 MGRN1O60291 552 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 PLIN3O60664 434 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 LRP3O75074 770 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 PIGNO95427 931 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 TBC1D3HP0C7X1 549 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 CYP2A6P11509 494 aaPredicted RBP10.15□□□□□ -0.79
VPS53-202ENST00000389040 ZNF30P17039 623 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 HLA-DPA1P20036 260 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 GKP32189 559 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 ADRA1AP35348 466 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 CSE1LP55060 971 aaKnown RBP10.15□□□□□ -0.79
VPS53-202ENST00000389040 TAS2R38P59533 333 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 IRX4P78413 519 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 OCRLQ01968 901 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 CDK18Q07002 472 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 FASTKD1Q53R41 847 aaKnown RBP10.15□□□□□ -0.79
VPS53-202ENST00000389040 PPM1JQ5JR12 505 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 PCID2Q5JVF3 399 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 ARMC3Q5W041 872 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 CES4AQ5XG92 561 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 KIAA0895LQ68EN5 471 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 PDPK2PQ6A1A2 396 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 TBC1D3GQ6DHY5 549 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 TBC1D3CQ6IPX1 549 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 C16orf46Q6P387 395 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 TBC1D3Q8IZP1 549 aaPredicted RBP10.15□□□□□ -0.79
VPS53-202ENST00000389040 KIF2BQ8N4N8 673 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 PAF1Q8N7H5 531 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 PPHLN1Q8NEY8 458 aaKnown RBP10.15□□□□□ -0.79
VPS53-202ENST00000389040 IFT43Q96FT9 208 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 ATXN7L3BQ96GX2 97 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 MCMBPQ9BTE3 642 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 C1QTNF7Q9BXJ2 289 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 FSD1LQ9BXM9 530 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 IARS2Q9NSE4 1012 aaKnown RBP10.15□□□□□ -0.79
VPS53-202ENST00000389040 NSMCE4AQ9NXX6 385 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 SERGEFQ9UGK8 458 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 SUSD2Q9UGT4 822 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 TRIM33Q9UPN9 1127 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 CACNA1IQ9P0X4 2223 aa10.15□□□□□ -0.79
VPS53-202ENST00000389040 A0A0J9YYE9 177 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 RGSL1A5PLK6 1076 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 NEMP1O14524 444 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 TOR1BO14657 336 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 PMPCBO75439 489 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 NDST3O95803 873 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 TRBC1P01850 177 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 LMNAP02545 664 aaKnown RBP10.14□□□□□ -0.79
VPS53-202ENST00000389040 GNSP15586 552 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 CD27P26842 260 aa10.14□□□□□ -0.79
VPS53-202ENST00000389040 EPHB1P54762 984 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms