RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 TMEM114B3SHH9 223 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 BUD23O43709 281 aaKnown RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 PFDN1O60925 122 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 RNASEH1O60930 286 aaKnown RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 ZCCHC18P0CG32 403 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 ALOX15P16050 662 aaPredicted RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 MAPKAPK2P49137 400 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 CSRP3P50461 194 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 ACTR3P61158 418 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 AP2B1P63010 937 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 PHEXP78562 749 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 THOC5Q13769 683 aaKnown RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 ADRM1Q16186 407 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 PTPRNQ16849 979 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 KDELC1Q6UW63 502 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 ZC3HC1Q86WB0 502 aaKnown RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 TMPRSS6Q8IU80 811 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 PLD6Q8N2A8 252 aaKnown RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 TADA1Q96BN2 335 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 DGCR14Q96DF8 476 aaKnown RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 MRGPRX2Q96LB1 330 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 SLC25A51Q9H1U9 297 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 CAB39LQ9H9S4 337 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 NMRAL1Q9HBL8 299 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 ARNT2Q9HBZ2 717 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 ZNF358Q9NW07 568 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 VPS51Q9UID3 782 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 TLK1Q9UKI8 766 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 APOBEC2Q9Y235 224 aaKnown RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 CHD5Q8TDI0 1954 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 A0A0J9YVX5 310 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 ILVBLA1L0T0 632 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 G3V2L1 256 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 KLHL2O95198 593 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 KLF8O95600 359 aaPredicted RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 ALDH18A1P54886 795 aaKnown RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 ZNF234Q14588 700 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 PDSS2Q86YH6 399 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 TREML1Q86YW5 311 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 CHPFQ8IZ52 775 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 TMEM105Q8N8V8 129 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 IL17RCQ8NAC3 791 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 TXNDC5Q8NBS9 432 aaKnown RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 RDH11Q8TC12 318 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 DTX3LQ8TDB6 740 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 IMP4Q96G21 291 aaKnown RBP14.22□□□□□ -0.13
HMGA1-203ENST00000374116 MSANTD3Q96H12 275 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 TSNARE1Q96NA8 513 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 EBF4Q9BQW3 602 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 FSD1LQ9BXM9 530 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 SLC39A10Q9ULF5 831 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 TCAF1Q9Y4C2 921 aa14.22□□□□□ -0.13
HMGA1-203ENST00000374116 B2RBV5 119 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 J3KR12 359 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 BNIP3LO60238 219 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 SIN3BO75182 1162 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 ENO1P06733 434 aaKnown RBP14.21□□□□□ -0.13
HMGA1-203ENST00000374116 COL6A2P12110 1019 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 PAMP19021 973 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 AOC1P19801 751 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 IL12RB1P42701 662 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 RENBPP51606 427 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 PRKAA2P54646 552 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 ARF5P84085 180 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 ASPHQ12797 758 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 MSLNQ13421 630 aaPredicted RBP14.21□□□□□ -0.13
HMGA1-203ENST00000374116 TMED1Q13445 227 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 TUBB3Q13509 450 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 IHHQ14623 411 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 GRM3Q14832 879 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 POU6F1Q14863 301 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 DGKKQ5KSL6 1271 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 C6orf163Q5TEZ5 329 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 ZNF554Q86TJ5 538 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 ZBTB8BQ8NAP8 495 aaPredicted RBP14.21□□□□□ -0.13
HMGA1-203ENST00000374116 RETREG1Q9H6L5 497 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 ERVW-1Q9UQF0 538 aa14.21□□□□□ -0.13
HMGA1-203ENST00000374116 TTC34A8MYJ7 566 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 HNRNPRO43390 633 aaKnown RBP14.2□□□□□ -0.14
HMGA1-203ENST00000374116 SMAD6O43541 496 aaKnown RBP14.2□□□□□ -0.14
HMGA1-203ENST00000374116 TRIM13O60858 407 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 ADAM23O75077 832 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 PMPCBO75439 489 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 PGM1P36871 562 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 TNFRSF4P43489 277 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 ARCN1P48444 511 aaKnown RBP14.2□□□□□ -0.14
HMGA1-203ENST00000374116 YBEYP58557 167 aaPredicted RBP14.2□□□□□ -0.14
HMGA1-203ENST00000374116 ECT2LQ008S8 904 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 IRF9Q00978 393 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 SLC10A7Q0GE19 358 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 MTAPQ13126 283 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 SLC12A1Q13621 1099 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 DLG2Q15700 870 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 PARP15Q460N3 678 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 DNAL1Q4LDG9 190 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 FNDC3BQ53EP0 1204 aaKnown RBP14.2□□□□□ -0.14
HMGA1-203ENST00000374116 B3GNT6Q6ZMB0 384 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 RAPH1Q70E73 1250 aa14.2□□□□□ -0.14
HMGA1-203ENST00000374116 SMYD1Q8NB12 490 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms