RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TCF4P15884 667 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 RPL3P39023 403 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 SCNN1GP51170 649 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 EPHB3P54753 998 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 ZNF460Q14592 562 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 LRRC52Q8N7C0 313 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 HEXDCQ8WVB3 486 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 MAP10Q9P2G4 905 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 CNOT6Q9ULM6 557 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 NOBOXO60393 691 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 NOS1APO75052 506 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 SNHG28P0DPA3 235 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 MC4RP32245 332 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 GMFBP60983 142 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 CYP20A1Q6UW02 462 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 DRAXINQ8NBI3 349 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 TOR3AQ9H497 397 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 ST6GALNAC4Q9H4F1 302 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 MKL2Q9ULH7 1088 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 SNX7Q9UNH6 387 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 PRKAB1Q9Y478 270 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 SLC22A2O15244 555 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 ESRP1Q6NXG1 681 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 USP45Q70EL2 814 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 OR52B2Q96RD2 323 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 PKP2Q99959 881 aa19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 ZNF490Q9ULM2 529 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-202ENST00000356786 LMO7Q8WWI1 1683 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 PIP5K1BO14986 540 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 KHDRBS3O75525 346 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 SERPINB7O75635 380 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 SCELO95171 688 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 BMP10O95393 424 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 ACOX1Q15067 660 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 TTC29Q8NA56 475 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 OR52J3Q8NH60 311 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 PCDH19Q8TAB3 1148 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 TMCO6Q96DC7 493 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 MED28Q9H204 178 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 PRDM8Q9NQV8 689 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 DNAJA2O60884 412 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 NMBRP28336 390 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 SDC2P34741 201 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 NRLP54845 237 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 KLF1Q13351 362 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 ACAP2Q15057 778 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 SPATA22Q8NHS9 363 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 COL26A1Q96A83 441 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 C2orf49Q9BVC5 232 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 PCDHAC2Q9Y5I4 1007 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 A0A1W2PQ72 361 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 A0A1W2PRG6 482 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 AQP12BA6NM10 295 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 NKRFO15226 690 aaKnown RBP eCLIP19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 NPHS1O60500 1241 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 FABP3P05413 133 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 UGT2B4P06133 528 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 PKMP14618 531 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 ATP5C1P36542 298 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 AIF1P55008 147 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 POLR2LP62875 67 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 TNFAIP8L3Q5GJ75 292 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 RHBDF2Q6PJF5 856 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 RIOX2Q8IUF8 465 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 AQP12AQ8IXF9 295 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 UBE2E3Q969T4 207 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 VMP1Q96GC9 406 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 MTRRQ9UBK8 725 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 TCRBV7S3A2A0A539 114 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 EFCAB9A8MZ26 197 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 TNFRSF11BO00300 401 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 OR5F1O95221 314 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 AOC1P19801 751 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 TUBA4AP68366 448 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 CELF3Q5SZQ8 465 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 ANXA8L1Q5VT79 327 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 ERICH5Q6P6B1 374 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 GSDMCQ9BYG8 508 aa19.41■□□□□ 0.7
CCDC88B-202ENST00000356786 PHC1P78364 1004 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 RNASE12Q5GAN4 147 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 SVOPLQ8N434 492 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 PIK3R3Q92569 461 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 TBATAQ96M53 351 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 GBA3Q9H227 469 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 HIPK3Q9H422 1215 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 TIE1P35590 1138 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 HNF4AP41235 474 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 ENTPD1P49961 510 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 IST1P53990 364 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 RNF180Q86T96 592 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 SMG8Q8ND04 991 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 TTYH1Q9H313 450 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 PFDN2Q9UHV9 154 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 CLEC4AQ9UMR7 237 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 PCDHB9Q9Y5E1 797 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 KCNE2Q9Y6J6 123 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 A0A1W2PPW3 197 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 CCL22O00626 93 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms