RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CASTOR2A6NHX0 329 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 GOLGA8SH3BPF8 625 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 J3KR12 359 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 RASGRF2O14827 1237 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 MSI1O43347 362 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 SPOPO43791 374 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ULK1O75385 1050 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SOAT2O75908 522 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 GALTP07902 379 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 GSTA1P08263 222 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 GSTA2P09210 222 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 MYZAPP0CAP1 466 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ALDH3A1P30838 453 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CCR2P41597 374 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SLCO1A2P46721 670 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SLC6A9P48067 706 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 LMAN1P49257 510 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ZNF140P52738 457 aaPredicted RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 MLLT6P55198 1093 aaPredicted RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 ARF5P84085 180 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PRR5P85299 388 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CHRNEQ04844 493 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 MTM1Q13496 603 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 BTG3Q14201 252 aaPredicted RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 PPP1R3AQ16821 1122 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TYSND1Q2T9J0 566 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 NOMO2Q5JPE7 1267 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 FAXCQ5TGI0 409 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 BTBD8Q5XKL5 378 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 DARS2Q6PI48 645 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 DCLRE1AQ6PJP8 1040 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TMC5Q6UXY8 1006 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PACS1Q6VY07 963 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ZC3HC1Q86WB0 502 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 FAM131BQ86XD5 332 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TTC39CQ8N584 583 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CCDC89Q8N998 374 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 MDGA1Q8NFP4 955 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 GPR150Q8NGU9 434 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 FAM110BQ8TC76 370 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PHOSPHO1Q8TCT1 267 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 BCAS4Q8TDM0 211 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ANKRD49Q8WVL7 239 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 HSPH1Q92598 858 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ARHGEF2Q92974 986 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 LRRC39Q96DD0 335 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 APOPT1Q96IL0 206 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ZNF333Q96JL9 665 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ZNF570Q96NI8 536 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 LRRC3BQ96PB8 259 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 FCRL5Q96RD9 977 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 RBBP8Q99708 897 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SYT15Q9BQS2 421 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 EBF4Q9BQW3 602 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ADPGKQ9BRR6 497 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CADM1Q9BY67 442 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 P2RY12Q9H244 342 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 VPS11Q9H270 941 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP2.33□□□□□ -2.04
VPS54-202ENST00000354504 LHX3Q9UBR4 397 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PCDHGB4Q9UN71 923 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PPIL1Q9Y3C6 166 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PCDHGB5Q9Y5G0 923 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 DCHS2Q6V1P9 2916 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 A0A087WUV0 522 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 TRBV5-4A0A0C4DH59 114 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 FAM237BA0A1B0GVD1 139 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 LRRD1A4D1F6 860 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 TCP11X1B4DZS4 312 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 IQCJ-SCHIP1C9J366 451 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 H3BMM5 538 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 GOLGA8MH3BSY2 632 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 TM9SF1O15321 606 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 PIP5K1CO60331 668 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 PLIN3O60664 434 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 TMEM127O75204 238 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 UNC5CO95185 931 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 TBX18O95935 607 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ZBED1O96006 694 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 AHSGP02765 367 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 HPXP02790 462 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 C8AP07357 584 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 BPGMP07738 259 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 PRSS56P0CW18 603 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 RARBP10826 455 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CD9P21926 228 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CCNCP24863 283 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 HNRNPH1P31943 449 aaKnown RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 TKTL1P51854 596 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CDR1P51861 262 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 HK3P52790 923 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CDH6P55285 790 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 IL13RA1P78552 427 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CETN1Q12798 172 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 PDIA2Q13087 525 aaKnown RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 PEX6Q13608 980 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 DLG2Q15700 870 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 FSCBQ5H9T9 825 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CERCAMQ5T4B2 595 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms