RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 LIN37Q96GY3 246 aaPredicted RBP13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 KLF15Q9UIH9 416 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 MAPTP10636 758 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 TUBG1P23258 451 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 CFL1P23528 166 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 HSD11B1P28845 292 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 SSR2P43308 183 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 GCNT6Q5T4J0 391 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 BORAQ6PGQ7 559 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ABRAQ8N0Z2 381 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 OR5B12Q96R08 314 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 LPIN3Q9BQK8 851 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 TKTL2Q9H0I9 626 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 PADI2Q9Y2J8 665 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF451Q9Y4E5 1061 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 TNFRSF10BO14763 440 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ENTPD3O75355 529 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 CLCN7P51798 805 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 CA9Q16790 459 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 CERCAMQ5T4B2 595 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF627Q7L945 461 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 FUKQ8N0W3 1084 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 PTGR2Q8N8N7 351 aaPredicted RBP13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 GRIN3AQ8TCU5 1115 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 CERS2Q96G23 380 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 CEP295NLQ96MC4 621 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 PEX11AO75192 247 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ECHDC2Q86YB7 292 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 OR14K1Q8NGZ2 314 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 HASPINQ8TF76 798 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF510Q9Y2H8 683 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 UMODL1Q5DID0 1318 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ITGA10O75578 1167 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 PGLSO95336 258 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 RPLP0P05388 317 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 FESP07332 822 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 YES1P07947 543 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 PAEPP09466 180 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ANXA3P12429 323 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ACVR2AP27037 513 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 SBK1Q52WX2 424 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 CLEC17AQ6ZS10 378 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 CAND1Q86VP6 1230 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ZYG11BQ9C0D3 744 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ICAM1P05362 532 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 TSHRP16473 764 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 DNAJA1P31689 397 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 P2RY8Q86VZ1 359 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF280BQ86YH2 543 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 AARSD1Q9BTE6 412 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 SEMA4AQ9H3S1 761 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 ATP5A1P25705 553 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CD40LGP29965 261 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 GBX2P52951 348 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 SULT2A1Q06520 285 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 PLEKHG4Q58EX7 1191 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 SERPINA13PQ6UXR4 307 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 SVOPLQ8N434 492 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 GPATCH1Q9BRR8 931 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 TUBB1Q9H4B7 451 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 NR2C1P13056 603 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CHMP24386 653 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CHKAP35790 457 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CD86P42081 329 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 DCDC1P59894 354 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNF155Q12901 538 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 DNM1P34Q6PK57 102 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 KCNT2Q6UVM3 1135 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 TRMOQ9BU70 441 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 MIR1-1HGQ9H1L0 117 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 SYT4Q9H2B2 425 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 EQTNQ9NQ60 294 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 WASF2Q9Y6W5 498 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 ABCA8O94911 1581 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 ILVBLA1L0T0 632 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 DLSTP36957 453 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 FAAP100Q0VG06 881 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 HERC3Q15034 1050 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CD300LFQ8TDQ1 290 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 SLC38A4Q969I6 547 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 SGK2Q9HBY8 427 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 TMEM184CQ9NVA4 438 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 GPATCH2LQ9NWQ4 482 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 DGKBQ9Y6T7 804 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CSTBP04080 98 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CREB5Q02930 508 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 DUSP4Q13115 394 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 PON3Q15166 354 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 C15orf59Q2T9L4 293 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 PLEKHN1Q494U1 663 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 XKR4Q5GH76 650 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 USP30Q70CQ3 517 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 TREML1Q86YW5 311 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 CFAP206Q8IYR0 622 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 OR10H4Q8NGA5 316 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 MBOAT7Q96N66 472 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 A0A0A0MRY4 1105 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 PRAMEF12O95522 483 aa13.85□□□□□ -0.19
CCDC88A-201ENST00000263630 ANGPTL1O95841 491 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms