RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MBD5Q9P267 1494 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 IFT172Q9UG01 1749 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 TRBV23OR9-2A0A075B6M9 112 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 ARVCFO00192 962 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 PLIN3O60664 434 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 CDK14O94921 469 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 NTRK1P04629 796 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 LPLP06858 475 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 LBX1P52954 281 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 MAPKAPK3Q16644 382 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 AAGABQ6PD74 315 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 FAM92BQ6ZTR7 304 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 C1orf186Q6ZWK4 172 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 AMZ2Q86W34 360 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 SLC43A3Q8NBI5 491 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 OR4C15Q8NGM1 316 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 GPR152Q8TDT2 470 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 TM9SF4Q92544 642 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 FOXJ1Q92949 421 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 PTGFRNQ9P2B2 879 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 RAPGEFL1Q9UHV5 662 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 PADI3Q9ULW8 664 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 RUVBL1Q9Y265 456 aaKnown RBP6.11□□□□□ -1.43
SCN1A-217ENST00000637988 ERGIC3Q9Y282 383 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 ADAM18Q9Y3Q7 739 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 PCDHGA6Q9Y5G7 932 aa6.11□□□□□ -1.43
SCN1A-217ENST00000637988 GPC6Q9Y625 555 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-217ENST00000637988 H3BQF6 201 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 RTCAO00442 366 aaKnown RBP6.1□□□□□ -1.43
SCN1A-217ENST00000637988 HEXAP06865 529 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 GCNT1Q02742 428 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 TAF10Q12962 218 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 CPTPQ5TA50 214 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 NEPROQ6NW34 567 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 SV2AQ7L0J3 742 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 C1orf216Q8TAB5 229 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 RORBQ92753 470 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 ACAT2Q9BWD1 397 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 WDR26Q9H7D7 661 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 IFT46Q9NQC8 304 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 GDF3Q9NR23 364 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 ARMCX1Q9P291 453 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 SEC14L3Q9UDX4 400 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 SLC24A2Q9UI40 661 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 TEX13CA0A0J9YWL9 993 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 A0A1W2PQH9 124 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 F8VZ95 297 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 OR1F1O43749 312 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 RENP00797 406 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 CAV3P56539 151 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 CTBP2P56545 445 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 MAPK7Q13164 816 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 TRIM25Q14258 630 aaKnown RBP6.1□□□□□ -1.43
SCN1A-217ENST00000637988 TRIM16LQ309B1 348 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 KCNT2Q6UVM3 1135 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 DEF8Q6ZN54 512 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 GPRIN3Q6ZVF9 776 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 CFAP52Q8N1V2 620 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 COX18Q8N8Q8 333 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 TAS1R2Q8TE23 839 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 RADILQ96JH8 1075 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 ACO2Q99798 780 aaKnown RBP6.1□□□□□ -1.43
SCN1A-217ENST00000637988 SEMA4BQ9NPR2 832 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-217ENST00000637988 GNEQ9Y223 722 aaKnown RBP6.1□□□□□ -1.43
SCN1A-217ENST00000637988 FAM25EA8MYX2 175 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 TRIM38O00635 465 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 LDLRP01130 860 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 COL6A1P12109 1028 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 SLC6A9P48067 706 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 RARRES1P49788 294 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 RAB28P51157 221 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 CDH4P55283 916 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 GMFBP60983 142 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 DNAJC14Q6Y2X3 702 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-217ENST00000637988 TMPRSS11AQ6ZMR5 421 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 GALNTL5Q7Z4T8 443 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 CLHC1Q8NHS4 586 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 BORCS8Q96FH0 119 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 EXOC2Q96KP1 924 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 UPB1Q9UBR1 384 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 DISP2A7MBM2 1401 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 LINC00854A0A1B0GVQ3 168 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 MAFO75444 373 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-217ENST00000637988 PSMB9P28065 219 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 PDHA2P29803 388 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 ATP6V0D1P61421 351 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 SPIBQ01892 262 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 TAF5Q15542 800 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 SLC30A6Q6NXT4 461 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 ZNF852Q6ZMS4 543 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 STOX1Q6ZVD7 989 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 OTOP1Q7RTM1 612 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 FAM35AQ86V20 835 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 GPALPP1Q8IXQ4 340 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 CADM2Q8N3J6 435 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 ACOT12Q8WYK0 555 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 ZSWIM3Q96MP5 696 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 CSPG4P5Q96PW8 444 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 PSKH2Q96QS6 385 aa6.1□□□□□ -1.43
SCN1A-217ENST00000637988 C9orf16Q9BUW7 83 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms