RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 TMEM174Q8WUU8 243 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 NUAK2Q9H093 628 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 ACTR8Q9H981 624 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 BTBD3Q9Y2F9 522 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 ITGB4P16144 1822 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 COQ9O75208 318 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 CYP7B1O75881 506 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 RUNX1T1Q06455 604 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 PTPRNQ16849 979 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 FAM219BQ5XKK7 198 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 STX19Q8N4C7 294 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 ABHD11Q8NFV4 315 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 FAM110BQ8TC76 370 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 FAR1Q8WVX9 515 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 SENP8Q96LD8 212 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 TOR3AQ9H497 397 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 WWOXQ9NZC7 414 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.99□□□□□ -0.65
CLN3-244ENST00000636147 EHD3Q9NZN3 535 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 ZNHIT2Q9UHR6 403 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 ZNF112Q9UJU3 913 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 STX7O15400 261 aaKnown RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 CPSF4O95639 269 aaKnown RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 CYBBP04839 570 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 UFM1P61960 85 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 CLCQ05315 142 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 EN1Q05925 392 aaPredicted RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 DALRD3Q5D0E6 543 aaKnown RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 SLC2A7Q6PXP3 512 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 GPSM1Q86YR5 675 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 TBC1D15Q8TC07 691 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 C17orf50Q8WW18 174 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 DNAJB3Q8WWF6 145 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 EXOC2Q96KP1 924 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 NSUN5Q96P11 429 aaKnown RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 OLFM1Q99784 485 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 TSEN34Q9BSV6 310 aaKnown RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 MLPHQ9BV36 600 aaPredicted RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 PIM2Q9P1W9 311 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 CNOT11Q9UKZ1 510 aaKnown RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 POLR3HQ9Y535 204 aaPredicted RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 SOWAHBA6NEL2 793 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 MOXD2PA6NHM9 499 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 BCKDKO14874 412 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 UGT2B4P06133 528 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 EFEMP1Q12805 493 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 GALNT3Q14435 633 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 DDR2Q16832 855 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 CACHD1Q5VU97 1274 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 NANOGP8Q6NSW7 305 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 LYSMD3Q7Z3D4 306 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 CLIP4Q8N3C7 705 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 ANKFN1Q8N957 763 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 PDPRQ8NCN5 879 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 SETD9Q8NE22 299 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 TRUB1Q8WWH5 349 aaKnown RBP10.98□□□□□ -0.65
CLN3-244ENST00000636147 BHMTQ93088 406 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 FCRL2Q96LA5 508 aaPredicted RBP10.98□□□□□ -0.65
CLN3-244ENST00000636147 CDK15Q96Q40 435 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 CITED4Q96RK1 184 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 LHPPQ9H008 270 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 PLAC1Q9HBJ0 212 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 LAMB1P07942 1786 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 TOGARAM1Q9Y4F4 1720 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 PPP6CO00743 305 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 MSH3P20585 1137 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 MYF6P23409 242 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 VARSP26640 1264 aaKnown RBP10.98□□□□□ -0.65
CLN3-244ENST00000636147 MAGEA6P43360 314 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 ALDH3B2P48448 385 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 ACADVLP49748 655 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 ARSFP54793 590 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 LRRC74AQ0VAA2 488 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 ACAP2Q15057 778 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 TSNQ15631 228 aaKnown RBP10.98□□□□□ -0.65
CLN3-244ENST00000636147 TREML2Q5T2D2 321 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 ANKRD26P1Q6NSI1 321 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 THEM5Q8N1Q8 247 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 SVOPQ8N4V2 548 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 LEMD2Q8NC56 503 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 SLC47A1Q96FL8 570 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 COQ7Q99807 217 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 APOL4Q9BPW4 351 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 FUNDC2Q9BWH2 189 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 TMEM9Q9P0T7 183 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 KLQ9UEF7 1012 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 TMED5Q9Y3A6 229 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 KLRG2A4D1S0 409 aaPredicted RBP10.98□□□□□ -0.65
CLN3-244ENST00000636147 BMP2P12643 396 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 IMPDH1P20839 514 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 AZGP1P25311 298 aaKnown RBP10.98□□□□□ -0.65
CLN3-244ENST00000636147 ADCYAP1R1P41586 468 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 PTPRCAPQ14761 206 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 ZNF789Q5FWF6 425 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 AMER2Q8N7J2 671 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 PSD4Q8NDX1 1056 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 PNPT1Q8TCS8 783 aaKnown RBP10.98□□□□□ -0.65
CLN3-244ENST00000636147 IRGQQ8WZA9 623 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 ZFP42Q96MM3 310 aa10.98□□□□□ -0.65
CLN3-244ENST00000636147 ASB2Q96Q27 587 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms