RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 GRIN3AQ8TCU5 1115 aa12.67□□□□□ -0.38
UPF1-208ENST00000600012 FSD1LQ9BXM9 530 aa12.67□□□□□ -0.38
UPF1-208ENST00000600012 HDAC8Q9BY41 377 aa12.67□□□□□ -0.38
UPF1-208ENST00000600012 FUT8Q9BYC5 575 aa12.67□□□□□ -0.38
UPF1-208ENST00000600012 FRMD8Q9BZ67 464 aaPredicted RBP12.67□□□□□ -0.38
UPF1-208ENST00000600012 PHACTR1Q9C0D0 580 aa12.67□□□□□ -0.38
UPF1-208ENST00000600012 EPB41L4BQ9H329 900 aa12.67□□□□□ -0.38
UPF1-208ENST00000600012 FZD3Q9NPG1 666 aa12.67□□□□□ -0.38
UPF1-208ENST00000600012 EVA1BQ9NVM1 165 aa12.67□□□□□ -0.38
UPF1-208ENST00000600012 UCKL1Q9NWZ5 548 aa12.67□□□□□ -0.38
UPF1-208ENST00000600012 NLGN3Q9NZ94 848 aa12.67□□□□□ -0.38
UPF1-208ENST00000600012 IL36AQ9UHA7 158 aa12.67□□□□□ -0.38
UPF1-208ENST00000600012 ZFR2Q9UPR6 939 aaKnown RBP12.67□□□□□ -0.38
UPF1-208ENST00000600012 BPTFQ12830 3046 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 TEX51A0A1B0GUA7 166 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 NEMP2A6NFY4 417 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 OPA1O60313 960 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 ZNF821O75541 412 aaPredicted RBP12.66□□□□□ -0.38
UPF1-208ENST00000600012 SASH3O75995 380 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 ACSL3O95573 720 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 IGSF6O95976 241 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 PRB1P04280 392 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 GP1BAP07359 652 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 MLNP12872 115 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 GKP32189 559 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 ELK3P41970 407 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 DUSP3P51452 185 aaPredicted RBP12.66□□□□□ -0.38
UPF1-208ENST00000600012 NEK3P51956 506 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 CRADDP78560 199 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 TLE3Q04726 772 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 TRAF2Q12933 501 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 KYNUQ16719 465 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 TMEM259Q4ZIN3 620 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 ARSIQ5FYB1 569 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 DENND5AQ6IQ26 1287 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 HDXQ7Z353 690 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 PTAR1Q7Z6K3 402 aaPredicted RBP12.66□□□□□ -0.38
UPF1-208ENST00000600012 SRLQ86TD4 932 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 RYBPQ8N488 228 aaPredicted RBP12.66□□□□□ -0.38
UPF1-208ENST00000600012 FBXO36Q8NEA4 188 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 UHMK1Q8TAS1 419 aaKnown RBP12.66□□□□□ -0.38
UPF1-208ENST00000600012 DEPDC7Q96QD5 511 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 DUSP23Q9BVJ7 150 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 CEP44Q9C0F1 390 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 SYBUQ9NX95 663 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 TEX264Q9Y6I9 313 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 SCN8AQ9UQD0 1980 aa12.66□□□□□ -0.38
UPF1-208ENST00000600012 CXorf51AA0A1B0GTR3 108 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 SCAMP1O15126 338 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 RIPK2O43353 540 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 LEFTY1O75610 366 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 C1QL1O75973 258 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 PIGNO95427 931 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 CPP00450 1065 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 GIMD1P0DJR0 217 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 TPH1P17752 444 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 ITGB7P26010 798 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 PCBP4P57723 403 aaKnown RBP12.65□□□□□ -0.38
UPF1-208ENST00000600012 CLDN2P57739 230 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 HNRNPKP61978 463 aaKnown RBP eCLIP12.65□□□□□ -0.38
UPF1-208ENST00000600012 RPS21P63220 83 aaKnown RBP12.65□□□□□ -0.38
UPF1-208ENST00000600012 NSUN2Q08J23 767 aaKnown RBP eCLIP12.65□□□□□ -0.38
UPF1-208ENST00000600012 CDH17Q12864 832 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 GALNT3Q14435 633 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 SLC14A2Q15849 920 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 CCDC38Q502W7 563 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 CERCAMQ5T4B2 595 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 CDCP2Q5VXM1 449 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 SEL1L3Q68CR1 1132 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 DENND2CQ68D51 928 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 KIAA1161Q6NSJ0 714 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 KYAT3Q6YP21 454 aaKnown RBP12.65□□□□□ -0.38
UPF1-208ENST00000600012 DPY19L3Q6ZPD9 716 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 Q6ZSR6 202 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 TRMT10CQ7L0Y3 403 aaKnown RBP12.65□□□□□ -0.38
UPF1-208ENST00000600012 LINC00523Q86TU6 105 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 RELL1Q8IUW5 271 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 SPACA3Q8IXA5 215 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 LSMEM2Q8N112 164 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 SLC22A18ASQ8N1D0 253 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 PCDH20Q8N6Y1 951 aaKnown RBP12.65□□□□□ -0.38
UPF1-208ENST00000600012 FAM181AQ8N9Y4 354 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 ZNF248Q8NDW4 579 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 OR2AP1Q8NGE2 309 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 PYROXD1Q8WU10 500 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 CFAP36Q96G28 342 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 SIGLEC10Q96LC7 697 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 APOLD1Q96LR9 279 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 ZNF578Q96N58 590 aaPredicted RBP12.65□□□□□ -0.38
UPF1-208ENST00000600012 TRIM56Q9BRZ2 755 aaKnown RBP12.65□□□□□ -0.38
UPF1-208ENST00000600012 TDRD1Q9BXT4 1180 aaKnown RBP12.65□□□□□ -0.38
UPF1-208ENST00000600012 GPR27Q9NS67 375 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 DNAJC28Q9NX36 388 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 CHKBQ9Y259 395 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 PCDHB1Q9Y5F3 818 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 PCDHGC4Q9Y5F7 938 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 HS3ST3A1Q9Y663 406 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 MAD1L1Q9Y6D9 718 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 WASF2Q9Y6W5 498 aa12.65□□□□□ -0.38
UPF1-208ENST00000600012 COL6A6A6NMZ7 2263 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms