RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	PKD2L2	Q9NZM6	624 aa		13.23	□□□□□ -0.29
SREBF1-223	ENST00000584760	FAM153A	Q9UHL3	310 aa		13.23	□□□□□ -0.29
SREBF1-223	ENST00000584760	MOSPD1	Q9UJG1	213 aa		13.23	□□□□□ -0.29
SREBF1-223	ENST00000584760	AMFR	Q9UKV5	643 aa		13.23	□□□□□ -0.29
SREBF1-223	ENST00000584760	PADI4	Q9UM07	663 aa		13.23	□□□□□ -0.29
SREBF1-223	ENST00000584760	SUFU	Q9UMX1	484 aa		13.23	□□□□□ -0.29
SREBF1-223	ENST00000584760	PACSIN2	Q9UNF0	486 aa	Predicted RBP	13.23	□□□□□ -0.29
SREBF1-223	ENST00000584760	GPR34	Q9UPC5	381 aa		13.23	□□□□□ -0.29
SREBF1-223	ENST00000584760	SPO11	Q9Y5K1	396 aa		13.23	□□□□□ -0.29
SREBF1-223	ENST00000584760	ST14	Q9Y5Y6	855 aa		13.23	□□□□□ -0.29
SREBF1-223	ENST00000584760	LOC285095	A0A1B0GVY8	99 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	MIF4GD	A9UHW6	222 aa	Known RBP	13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760		H7C0C1	242 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	CASC3	O15234	703 aa	Known RBP	13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	DDX3Y	O15523	660 aa	Known RBP	13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	KLK10	O43240	276 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	NOBOX	O60393	691 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	USP12	O75317	370 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	FTCD	O95954	541 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	RBL1	P28749	1068 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	GNPDA1	P46926	289 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	ATP5O	P48047	213 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	UCN	P55089	124 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	WNT3A	P56704	352 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	GABRE	P78334	506 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	CCDC181	Q5TID7	509 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	OGFOD3	Q6PK18	319 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	DOK6	Q6PKX4	331 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	TMC3	Q7Z5M5	1100 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	TAF8	Q7Z7C8	310 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	NRROS	Q86YC3	692 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	FAM46D	Q8NEK8	389 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	CCHCR1	Q8TD31	782 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	KCNE4	Q8WWG9	221 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	WBP1	Q96G27	269 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	MRGPRX2	Q96LB1	330 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	DEPDC7	Q96QD5	511 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	FAM118B	Q9BPY3	351 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	CCDC3	Q9BQI4	270 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	GORASP1	Q9BQQ3	440 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	GBA3	Q9H227	469 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	SUDS3	Q9H7L9	328 aa	Predicted RBP	13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	C10orf88	Q9H8K7	445 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	GULP1	Q9UBP9	304 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	RSPH14	Q9UHP6	348 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	RABGEF1	Q9UJ41	708 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	TRHDE	Q9UKU6	1024 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	CNOT6	Q9ULM6	557 aa	Known RBP	13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	SHOC2	Q9UQ13	582 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	ADGRG1	Q9Y653	693 aa		13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	OAS3	Q9Y6K5	1087 aa	Known RBP	13.22	□□□□□ -0.29
SREBF1-223	ENST00000584760	UNC13C	Q8NB66	2214 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760		B4DGG1	531 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760		B8ZZF3	427 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760		F5H423	210 aa	Predicted RBP	13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	INPP4B	O15327	924 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	CS	O75390	466 aa	Known RBP	13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	TJP3	O95049	919 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	EPO	P01588	193 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	SLC4A1	P02730	911 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	RBP3	P10745	1247 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	ADCY8	P40145	1251 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	CHRNA4	P43681	627 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	PDX1	P52945	283 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	EIF3E	P60228	445 aa	Known RBP	13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	ILF3	Q12906	894 aa	Known RBP eCLIP	13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	KLF1	Q13351	362 aa	Predicted RBP	13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	SIRPB2	Q5JXA9	342 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	CERCAM	Q5T4B2	595 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	PID1	Q7Z2X4	250 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	CDKL3	Q8IVW4	592 aa	Predicted RBP	13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	LSMEM2	Q8N112	164 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	RNF10	Q8N5U6	811 aa	Known RBP	13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	UBL4B	Q8N7F7	174 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	CCDC74A	Q96AQ1	378 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	HES6	Q96HZ4	224 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	OR2M4	Q96R27	311 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	GSDMC	Q9BYG8	508 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	CDH19	Q9H159	772 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	ABCG4	Q9H172	646 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	FAM83D	Q9H4H8	585 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	CLMP	Q9H6B4	373 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	VPS18	Q9P253	973 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	TMEM98	Q9Y2Y6	226 aa		13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	13.21	□□□□□ -0.29
SREBF1-223	ENST00000584760	NTN3	O00634	580 aa	Predicted RBP	13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	AURKA	O14965	403 aa		13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	ARHGAP6	O43182	974 aa		13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	TCEA3	O75764	348 aa		13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	AK4	P27144	223 aa	Predicted RBP	13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	CETN2	P41208	172 aa		13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	LSS	P48449	732 aa		13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	KCNC4	Q03721	635 aa		13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	MPP3	Q13368	585 aa		13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	HLTF	Q14527	1009 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	SLC1A5	Q15758	541 aa		13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	C14orf28	Q4W4Y0	310 aa		13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	PYCR3	Q53H96	274 aa		13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	ALS2CL	Q60I27	953 aa		13.2	□□□□□ -0.3
SREBF1-223	ENST00000584760	CCDC70	Q6NSX1	233 aa		13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms