RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	FOXP3	Q9BZS1	431 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	CARD9	Q9H257	536 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	TRABD	Q9H4I3	376 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	ZNHIT2	Q9UHR6	403 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	BPTF	Q12830	3046 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	FASN	P49327	2511 aa	Known RBP	13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	KIR2DS5	A0A0G2JLQ3	304 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445		A0A0G2JNG1	304 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	KIR2DS3	K7RE56	304 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	INPP4B	O15327	924 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	SOD1	P00441	154 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	PRL	P01236	227 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	VCL	P18206	1134 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	COMT	P21964	271 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	SLC5A2	P31639	672 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	MAGEA1	P43355	309 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	MAZ	P56270	477 aa	Known RBP	13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	DYNLT1	P63172	113 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	B4GALNT1	Q00973	533 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	SLC10A2	Q12908	348 aa	Predicted RBP	13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	COL9A2	Q14055	689 aa	Predicted RBP	13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	KIR2DS5	Q14953	304 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	AMZ1	Q400G9	498 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	TEX44	Q53QW1	395 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	KCTD16	Q68DU8	428 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	C11orf63	Q6NUN7	778 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	XKR5	Q6UX68	686 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	LYSMD3	Q7Z3D4	306 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	SLC9B2	Q86UD5	537 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	SLITRK4	Q8IW52	837 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	TRAM1L1	Q8N609	369 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	ZSCAN1	Q8NBB4	408 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	AGBL5	Q8NDL9	886 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	OR4D9	Q8NGE8	314 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	PRR11	Q96HE9	360 aa	Predicted RBP	13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	AGAP3	Q96P47	875 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	PPP1R2P1	Q96PQ5	205 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	SLC38A3	Q99624	504 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	SPATA16	Q9BXB7	569 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	ZCCHC2	Q9C0B9	1178 aa	Known RBP	13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	KCNK4	Q9NYG8	393 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	HACD3	Q9P035	362 aa		13.97	□□□□□ -0.17
TPM1-223	ENST00000560445	C3orf70	A6NLC5	250 aa	Predicted RBP	13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	HACD1	B0YJ81	288 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	STK10	O94804	968 aa	Known RBP	13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	NDST3	O95803	873 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	EPO	P01588	193 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	TNNT1	P13805	278 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	AK4	P27144	223 aa	Predicted RBP	13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	CSTF2	P33240	577 aa	Known RBP eCLIP	13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	POLD2	P49005	469 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	ATP1A2	P50993	1020 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	EPHA4	P54764	986 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	ZBTB17	Q13105	803 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	ARHGAP40	Q5TG30	622 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	MARK2	Q7KZI7	788 aa	Known RBP	13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	CCDC50	Q8IVM0	306 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	KATNAL2	Q8IYT4	538 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	RCOR2	Q8IZ40	523 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	NAGS	Q8N159	534 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	SFRP1	Q8N474	314 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	RNF25	Q96BH1	459 aa	Predicted RBP	13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	CRELD1	Q96HD1	420 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	PLEKHG4B	Q96PX9	1271 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	ASPSCR1	Q9BZE9	553 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	GLOD4	Q9HC38	313 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	SARS2	Q9NP81	518 aa	Known RBP	13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	TRHDE	Q9UKU6	1024 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	SSUH2	Q9Y2M2	353 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	TMEM98	Q9Y2Y6	226 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	ZNF711	Q9Y462	761 aa		13.96	□□□□□ -0.17
TPM1-223	ENST00000560445	KIF26B	Q2KJY2	2108 aa		13.96	□□□□□ -0.18
TPM1-223	ENST00000560445	ZFC3H1	O60293	1989 aa	Known RBP	13.95	□□□□□ -0.18
TPM1-223	ENST00000560445		A0A1W2PNU3	283 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM1-223	ENST00000560445		K7ENP7	123 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	GRID2	O43424	1007 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	VEGFD	O43915	354 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	CST8	O60676	142 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	PPFIA2	O75334	1257 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	SLC25A14	O95258	325 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	MMP2	P08253	660 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	CDKN2B	P42772	138 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	CLCNKA	P51800	687 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	LIMK2	P53671	638 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	OR1D5	P58170	312 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	RAB15	P59190	212 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	COPS2	P61201	443 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	TBX2	Q13207	712 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	CLN3	Q13286	438 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	GTF2H3	Q13889	308 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	GALNT3	Q14435	633 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	PRKD1	Q15139	912 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	CCDC181	Q5TID7	509 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	INO80C	Q6PI98	192 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	SPOCD1	Q6ZMY3	1216 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	CHST15	Q7LFX5	561 aa	Predicted RBP	13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	CPNE8	Q86YQ8	564 aa		13.95	□□□□□ -0.18
TPM1-223	ENST00000560445	CNTD1	Q8N815	330 aa		13.95	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms