RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 TMEM178BH3BS89 294 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 MOCS3O95396 460 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 EML2O95834 649 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 MT-CYBP00156 380 aaPredicted RBP2.37□□□□□ -2.03
SPG11-222ENST00000560435 SHMT1P34896 483 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 MLLT10P55197 1068 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 CSNK2A1P68400 391 aaPredicted RBP2.37□□□□□ -2.03
SPG11-222ENST00000560435 FOXM1Q08050 763 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 PICALMQ13492 652 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 CUL4BQ13620 913 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 VEPH1Q14D04 833 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 TAF11Q15544 211 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 GLIPR1L2Q4G1C9 344 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 IL31Q6EBC2 164 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 PWWP2BQ6NUJ5 590 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 CSNK2A3Q8NEV1 391 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 SPPL3Q8TCT6 385 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 ORAI1Q96D31 301 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 BBS4Q96RK4 519 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 SIX2Q9NPC8 291 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 ZNF71Q9NQZ8 489 aaPredicted RBP2.37□□□□□ -2.03
SPG11-222ENST00000560435 PLCXD1Q9NUJ7 323 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 LRCH1Q9Y2L9 728 aa2.37□□□□□ -2.03
SPG11-222ENST00000560435 LSM4Q9Y4Z0 139 aaKnown RBP2.37□□□□□ -2.03
SPG11-222ENST00000560435 TDRD15B5MCY1 1934 aaKnown RBP2.36□□□□□ -2.03
SPG11-222ENST00000560435 IGLV3-10A0A075B6K4 115 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 SPINT2O43291 252 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 TCEA3O75764 348 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 NADKO95544 446 aaPredicted RBP2.36□□□□□ -2.03
SPG11-222ENST00000560435 TK1P04183 234 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 HEXAP06865 529 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 FRMD6-AS1P0C7T7 363 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 TRIM49P0CI25 452 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 TRIM49CP0CI26 452 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 MSH3P20585 1137 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 ITGA3P26006 1051 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 NEK3P51956 506 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 SNRPD1P62314 119 aaKnown RBP2.36□□□□□ -2.03
SPG11-222ENST00000560435 KCNJ10P78508 379 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 ICA1Q05084 483 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 ACVR2BQ13705 512 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 ZNF343Q6P1L6 599 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 KSR2Q6VAB6 950 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 GPR180Q86V85 440 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 ZNF584Q8IVC4 421 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 CACNA2D3Q8IZS8 1091 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 ZNF611Q8N823 705 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 ACVR1CQ8NER5 493 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 HUS1BQ8NHY5 278 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 HMGCLL1Q8TB92 370 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 RHBDF1Q96CC6 855 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 ZSCAN31Q96LW9 406 aaPredicted RBP2.36□□□□□ -2.03
SPG11-222ENST00000560435 CD180Q99467 661 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 PIGQQ9BRB3 760 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 WDR12Q9GZL7 423 aaKnown RBP2.36□□□□□ -2.03
SPG11-222ENST00000560435 MROH8Q9H579 483 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 SAYSD1Q9NPB0 183 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 NLRC4Q9NPP4 1024 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 TCP11L1Q9NUJ3 509 aa2.36□□□□□ -2.03
SPG11-222ENST00000560435 SLC22A2O15244 555 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 FAM155BO75949 473 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 FTCDO95954 541 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 MCCP23508 829 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 NFKBIAP25963 317 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 ELF1P32519 619 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 SLC6A12P48065 614 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 SNX16P57768 344 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 KCNC3Q14003 757 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 NAA25Q14CX7 972 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 HIST2H2ACQ16777 129 aaPredicted RBP2.35□□□□□ -2.03
SPG11-222ENST00000560435 SLC25A30Q5SVS4 291 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 XRRA1Q6P2D8 792 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 TADA2BQ86TJ2 420 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 MAP7D3Q8IWC1 876 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 BEST3Q8N1M1 668 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 LSM14AQ8ND56 463 aaKnown RBP2.35□□□□□ -2.03
SPG11-222ENST00000560435 RBM15BQ8NDT2 890 aaKnown RBP2.35□□□□□ -2.03
SPG11-222ENST00000560435 GRAMD2BQ96HH9 432 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 C8orf48Q96LL4 319 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 FAM110AQ9BQ89 295 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 EIF2AK1Q9BQI3 630 aaKnown RBP2.35□□□□□ -2.03
SPG11-222ENST00000560435 PSD2Q9BQI7 771 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 ALKBH4Q9NXW9 302 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 PEMTQ9UBM1 199 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 CLIP2Q9UDT6 1046 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 ERVK-11Q9UQG0 969 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 DNAJC16Q9Y2G8 782 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 KLHL20Q9Y2M5 609 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 FAM96BQ9Y3D0 163 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 ATRXP46100 2492 aa2.35□□□□□ -2.03
SPG11-222ENST00000560435 COL4A4P53420 1690 aaPredicted RBP2.34□□□□□ -2.03
SPG11-222ENST00000560435 OR5K3A6NET4 321 aa2.34□□□□□ -2.03
SPG11-222ENST00000560435 C5orf60A6NFR6 353 aa2.34□□□□□ -2.03
SPG11-222ENST00000560435 MAGEB17A8MXT2 336 aa2.34□□□□□ -2.03
SPG11-222ENST00000560435 TEX22C9J3V5 150 aa2.34□□□□□ -2.03
SPG11-222ENST00000560435 PEX12O00623 359 aa2.34□□□□□ -2.03
SPG11-222ENST00000560435 IGKV3-15P01624 115 aa2.34□□□□□ -2.03
SPG11-222ENST00000560435 CSTBP04080 98 aaKnown RBP2.34□□□□□ -2.03
SPG11-222ENST00000560435 GNAZP19086 355 aa2.34□□□□□ -2.03
SPG11-222ENST00000560435 POU1F1P28069 291 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms