RNA–Protein interactions for RNA: ENST00000558394.5

TSPAN3-204, Transcript of tetraspanin 3, humanhuman

TSL 4

Gene TSPAN3, Length 550 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-204ENST00000558394 C9orf72Q96LT7 481 aa17.65■□□□□ 0.42
TSPAN3-204ENST00000558394 NSMCE3Q96MG7 304 aa17.65■□□□□ 0.42
TSPAN3-204ENST00000558394 NUDCD1Q96RS6 583 aa17.65■□□□□ 0.42
TSPAN3-204ENST00000558394 TBC1D10AQ9BXI6 508 aa17.65■□□□□ 0.42
TSPAN3-204ENST00000558394 RCOR3Q9P2K3 495 aaPredicted RBP17.65■□□□□ 0.42
TSPAN3-204ENST00000558394 CPNE7Q9UBL6 633 aa17.65■□□□□ 0.42
TSPAN3-204ENST00000558394 TBC1D29Q9UFV1 150 aa17.65■□□□□ 0.42
TSPAN3-204ENST00000558394 KCNK6Q9Y257 313 aa17.65■□□□□ 0.42
TSPAN3-204ENST00000558394 MN1Q10571 1320 aaPredicted RBP17.65■□□□□ 0.42
TSPAN3-204ENST00000558394 LRCH4O75427 683 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 RASSF9O75901 435 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 RNF224P0DH78 156 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 CTPS1P17812 591 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 COL8A1P27658 744 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 DCTP40126 519 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 SEPHS1P49903 392 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 POLR2FP61218 127 aaKnown RBP17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 RPL7AP62424 266 aaKnown RBP17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 CAMK4Q16566 473 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 CLEC16AQ2KHT3 1053 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 EIF2S3LQ2VIR3 472 aaKnown RBP17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 NADK2Q4G0N4 442 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 PPP6R3Q5H9R7 873 aaPredicted RBP17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 RFX8Q6ZV50 586 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 NSMCE1Q8WV22 266 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 SCAMP4Q969E2 229 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 PCDHB18PQ96TA0 734 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 NOD2Q9HC29 1040 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 ACSS2Q9NR19 701 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 PRKAB1Q9Y478 270 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 PCDHGA6Q9Y5G7 932 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 SHANK1Q9Y566 2161 aa17.64■□□□□ 0.41
TSPAN3-204ENST00000558394 ZNF106Q9H2Y7 1883 aaKnown RBP17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 C21orf140B9A014 251 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 PGLSO95336 258 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 SOD1P00441 154 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 ACP5P13686 325 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 F3P13726 295 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 AMD1P17707 334 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 VARSP26640 1264 aaKnown RBP17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 GFERP55789 205 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 TRAF2Q12933 501 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 ERMARDQ5T6L9 678 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 LRRC66Q68CR7 880 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 PHYKPLQ8IUZ5 450 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 THAP4Q8WY91 577 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 TGM7Q96PF1 710 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 MCCC1Q96RQ3 725 aaPredicted RBP17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 TRIM55Q9BYV6 548 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 NLRC4Q9NPP4 1024 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 SLAMF7Q9NQ25 335 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 VPS18Q9P253 973 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 G3BP2Q9UN86 482 aaKnown RBP17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 CENPEQ02224 2701 aa17.63■□□□□ 0.41
TSPAN3-204ENST00000558394 LILRA5A6NI73 299 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 TOX3O15405 576 aaPredicted RBP17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 ATP1A1P05023 1023 aaKnown RBP17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 ZNF30P17039 623 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 TYRP1P17643 537 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 TNFAIP3P21580 790 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 EPHB1P54762 984 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 SH3BP2P78314 561 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 INPP5JQ15735 1006 aaPredicted RBP17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 RALGPS1Q5JS13 557 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 RFLNAQ6ZTI6 216 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 MON1BQ7L1V2 547 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 ZNF765Q7L2R6 523 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 NLRP8Q86W28 1048 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 PPP1R3BQ86XI6 285 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 TRIM48Q8IWZ4 208 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 NPWQ8N729 165 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 CT55Q8WUE5 264 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 COX14Q96I36 57 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 RIOK2Q9BVS4 552 aaKnown RBP17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 ACTL8Q9H568 366 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 RMI1Q9H9A7 625 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 LHX9Q9NQ69 397 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 PCSK1NQ9UHG2 260 aa17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 PCDHGA9Q9Y5G4 932 aaKnown RBP17.62■□□□□ 0.41
TSPAN3-204ENST00000558394 TCP11X1B4DZS4 312 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 DNAJC6O75061 913 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 SPAG6O75602 509 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 UBXN7O94888 489 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 VIPP01282 170 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 C9P02748 559 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 TPM2P07951 284 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 PSMA2P25787 234 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 CCL11P51671 97 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 MAXP61244 160 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 MRPL49Q13405 166 aaKnown RBP17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 PTPRRQ15256 657 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 CA9Q16790 459 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 PPP1R15BQ5SWA1 713 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 KCTD15Q96SI1 283 aaPredicted RBP17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 MGME1Q9BQP7 344 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 GANQ9H2C0 597 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 ZNF768Q9H5H4 540 aaKnown RBP17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 FAM207AQ9NSI2 230 aaPredicted RBP17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 SRPK3Q9UPE1 567 aa17.61■□□□□ 0.41
TSPAN3-204ENST00000558394 ZNF451Q9Y4E5 1061 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms