RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 CYC1P08574 325 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 CDH1P12830 882 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 HOXC9P31274 260 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 FASLGP48023 281 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 LMAN1P49257 510 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 HOXA1P49639 335 aaPredicted RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 EFNA5P52803 228 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 DRG2P55039 364 aaKnown RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 SNX16P57768 344 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 DCAF7P61962 342 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 RELQ04864 619 aaPredicted RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 CALD1Q05682 793 aaKnown RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 SLC20A2Q08357 652 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 CHAF1BQ13112 559 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 PRKG2Q13237 762 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 NAB2Q15742 525 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 EIF2S3LQ2VIR3 472 aaKnown RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 MYLK3Q32MK0 819 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 TMEM35AQ53FP2 167 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 GPATCH4Q5T3I0 446 aaKnown RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 CFAP58Q5T655 872 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 SARM1Q6SZW1 724 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 PCGF5Q86SE9 256 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 TBC1D1Q86TI0 1168 aaPredicted RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 TICAM1Q8IUC6 712 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP2.75□□□□□ -1.97
CD44-238ENST00000534296 IL17RCQ8NAC3 791 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 RND1Q92730 232 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 ARHGEF2Q92974 986 aaKnown RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 TTC14Q96N46 770 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 NR1H4Q96RI1 486 aaPredicted RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 MTERF1Q99551 399 aaKnown RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 BARD1Q99728 777 aaKnown RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 TREX2Q9BQ50 279 aaPredicted RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 LBHD1Q9BQE6 289 aaPredicted RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 NEURL2Q9BR09 285 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 PCGF1Q9BSM1 259 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 LRRC1Q9BTT6 524 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 MMP28Q9H239 520 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 CCDC68Q9H2F9 335 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 KIF9Q9HAQ2 790 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 FBRSL1Q9HCM7 1045 aaKnown RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 SLC6A13Q9NSD5 602 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 HCFC1R1Q9NWW0 138 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 MAP3K20Q9NYL2 800 aaKnown RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 MDFICQ9P1T7 246 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 TINAGQ9UJW2 476 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 CORO1CQ9ULV4 474 aaPredicted RBP2.75□□□□□ -1.97
CD44-238ENST00000534296 TCF19Q9Y242 345 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 TMEM5Q9Y2B1 443 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 PSAT1Q9Y617 370 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 CEPT1Q9Y6K0 416 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 MAU2Q9Y6X3 613 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 A0A1W2PRG0 241 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 ASPDHA6ND91 283 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 B4DLN1 442 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 PTGES3LE9PB15 166 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 P2RY10O00398 339 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 CAPN9O14815 690 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 XPNPEP2O43895 674 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 WDR1O75083 606 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 EGFP01133 1207 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 EIF2S1P05198 315 aaKnown RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 PRSS1P07477 247 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 SP1P08047 785 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 ZNF182P17025 639 aaPredicted RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 ALOX12P18054 663 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 CDH2P19022 906 aaPredicted RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 CAPN3P20807 821 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 S1PR1P21453 382 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 SAT1P21673 171 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 AMPHP49418 695 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 KRTAP10-7P60409 375 aaPredicted RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 TMEM115Q12893 351 aaPredicted RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 ILF3Q12906 894 aaKnown RBP eCLIP2.74□□□□□ -1.97
CD44-238ENST00000534296 CSTF3Q12996 717 aaKnown RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 MAD2L1Q13257 205 aaPredicted RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 OLIG2Q13516 323 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 WTAPQ15007 396 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 MED22Q15528 200 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 CCDC6Q16204 474 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 DCST1Q5T197 706 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 ANKRD54Q6NXT1 300 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 DUS1LQ6P1R4 473 aaKnown RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 NCEH1Q6PIU2 408 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 CYP20A1Q6UW02 462 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 PQLC2Q6ZP29 291 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 C1orf122Q6ZSJ8 110 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 USP43Q70EL4 1123 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 SLC26A9Q7LBE3 791 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 PXKQ7Z7A4 578 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 SLC9B2Q86UD5 537 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 CHERPQ8IWX8 916 aaKnown RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 ODF3L1Q8IXM7 274 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 C17orf53Q8N3J3 647 aaPredicted RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 CNBD1Q8NA66 436 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 ANKRD52Q8NB46 1076 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 LRRC8CQ8TDW0 803 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 PPP4R1Q8TF05 950 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 SGCDQ92629 289 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms