RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 PPARGC1AQ9UBK2 798 aaKnown RBP9.04□□□□□ -0.96
NUP54-211ENST00000512151 LIMA1Q9UHB6 759 aaKnown RBP9.04□□□□□ -0.96
NUP54-211ENST00000512151 TMEM98Q9Y2Y6 226 aa9.04□□□□□ -0.96
NUP54-211ENST00000512151 PRRC2AP48634 2157 aaKnown RBP9.03□□□□□ -0.96
NUP54-211ENST00000512151 BECN2A8MW95 431 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 FAM72CH0Y354 149 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 THAP12O43422 761 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 KIF1CO43896 1103 aaKnown RBP9.03□□□□□ -0.96
NUP54-211ENST00000512151 TMEM63AO94886 807 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 FGFR1OPO95684 399 aaKnown RBP9.03□□□□□ -0.96
NUP54-211ENST00000512151 GNA14O95837 355 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 STSP08842 583 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 KRT5P13647 590 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 HTR1EP28566 365 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 RGRP47804 291 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 GLRBP48167 497 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 SLC6A3Q01959 620 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 ACOX1Q15067 660 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 KRT31Q15323 416 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 ZNF630Q2M218 657 aaPredicted RBP9.03□□□□□ -0.96
NUP54-211ENST00000512151 SMTNL2Q2TAL5 461 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.03□□□□□ -0.96
NUP54-211ENST00000512151 PTPN20Q4JDL3 420 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 VWA5B1Q5TIE3 1220 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 FAM72AQ5TYM5 149 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 LCN10Q6JVE6 187 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 FAM72DQ6L9T8 149 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 BRAT1Q6PJG6 821 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 DPPA4Q7L190 304 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 PHLDB2Q86SQ0 1253 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 FAM72BQ86X60 149 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 FAM131BQ86XD5 332 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 NXPE1Q8N323 547 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 ZNF397Q8NF99 534 aaPredicted RBP9.03□□□□□ -0.96
NUP54-211ENST00000512151 SEC14L1Q92503 715 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 NSMCE3Q96MG7 304 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 NCAPGQ9BPX3 1015 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 ILKAPQ9H0C8 392 aaPredicted RBP9.03□□□□□ -0.96
NUP54-211ENST00000512151 MAGEH1Q9H213 219 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 SARS2Q9NP81 518 aaKnown RBP9.03□□□□□ -0.96
NUP54-211ENST00000512151 TAB2Q9NYJ8 693 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.03□□□□□ -0.96
NUP54-211ENST00000512151 ARMCX3Q9UH62 379 aaPredicted RBP9.03□□□□□ -0.96
NUP54-211ENST00000512151 HPCAL4Q9UM19 191 aa9.03□□□□□ -0.96
NUP54-211ENST00000512151 FARSAQ9Y285 508 aaKnown RBP9.03□□□□□ -0.96
NUP54-211ENST00000512151 LRRC10BA6NIK2 292 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 C19orf84I3L1E1 186 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 F9P00740 461 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 RHOQP17081 205 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 EEF1GP26641 437 aaKnown RBP9.02□□□□□ -0.97
NUP54-211ENST00000512151 ETFBP38117 255 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 MTIF2P46199 727 aaKnown RBP9.02□□□□□ -0.97
NUP54-211ENST00000512151 MAPKAPK2P49137 400 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 EPHA4P54764 986 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 LLGL1Q15334 1064 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 PYCR3Q53H96 274 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 TMCO4Q5TGY1 634 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 DUS1LQ6P1R4 473 aaKnown RBP9.02□□□□□ -0.97
NUP54-211ENST00000512151 IYDQ6PHW0 289 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 BNC2Q6ZN30 1099 aaPredicted RBP9.02□□□□□ -0.97
NUP54-211ENST00000512151 MARK2Q7KZI7 788 aaKnown RBP9.02□□□□□ -0.97
NUP54-211ENST00000512151 BNIPLQ7Z465 357 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 TRIM74Q86UV6 250 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 ZBTB2Q8N680 514 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 C1orf131Q8NDD1 294 aaKnown RBP9.02□□□□□ -0.97
NUP54-211ENST00000512151 NUS1Q96E22 293 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 ZNF641Q96N77 438 aaPredicted RBP9.02□□□□□ -0.97
NUP54-211ENST00000512151 NAP1L5Q96NT1 182 aaPredicted RBP9.02□□□□□ -0.97
NUP54-211ENST00000512151 TGM7Q96PF1 710 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 MDFIQ99750 246 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 TUBGCP2Q9BSJ2 902 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 VPS16Q9H269 839 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 GSX1Q9H4S2 264 aaPredicted RBP9.02□□□□□ -0.97
NUP54-211ENST00000512151 ZBTB20Q9HC78 741 aaPredicted RBP9.02□□□□□ -0.97
NUP54-211ENST00000512151 TMEM248Q9NWD8 314 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 C5AR2Q9P296 337 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 TBC1D29Q9UFV1 150 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 CSAG2Q9Y5P2 127 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 SLC30A1Q9Y6M5 507 aa9.02□□□□□ -0.97
NUP54-211ENST00000512151 FAM170AA1A519 330 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 RASA4BC9J798 803 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 BHMG1C9JSJ3 638 aaPredicted RBP9.01□□□□□ -0.97
NUP54-211ENST00000512151 RASA4O43374 803 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 MED7O43513 233 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 RAMP2O60895 175 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 SOD1P00441 154 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 MT-ND3P03897 115 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 CD99P14209 185 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 DRD2P14416 443 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 CD1EP15812 388 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 TYRP1P17643 537 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 CDK11BP21127 795 aaKnown RBP9.01□□□□□ -0.97
NUP54-211ENST00000512151 TNFAIP3P21580 790 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 GNA15P30679 374 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 SSTR2P30874 369 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 RPS15P62841 145 aaKnown RBP9.01□□□□□ -0.97
NUP54-211ENST00000512151 FANCCQ00597 558 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 GCNT1Q02742 428 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 ATP1A4Q13733 1029 aa9.01□□□□□ -0.97
NUP54-211ENST00000512151 KCNAB1Q14722 419 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms