RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SEC22CQ9BRL7 303 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 KIFC3Q9BVG8 833 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 KATNAL1Q9BW62 490 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 ACE2Q9BYF1 805 aaPredicted RBP12□□□□□ -0.49
LIMCH1-213ENST00000511496 PDZD7Q9H5P4 517 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 CCDC59Q9P031 241 aaKnown RBP12□□□□□ -0.49
LIMCH1-213ENST00000511496 VTI1BQ9UEU0 232 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC23A1Q9UHI7 598 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 SCML1Q9UN30 329 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 NR5A2O00482 541 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 SDHDO14521 159 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 CAPN5O15484 640 aaPredicted RBP12□□□□□ -0.49
LIMCH1-213ENST00000511496 PROS1P07225 676 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 KELP23276 732 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 AZGP1P25311 298 aaKnown RBP12□□□□□ -0.49
LIMCH1-213ENST00000511496 ERP29P30040 261 aaKnown RBP12□□□□□ -0.49
LIMCH1-213ENST00000511496 FMO3P31513 532 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 CCT3P49368 545 aaKnown RBP12□□□□□ -0.49
LIMCH1-213ENST00000511496 UBXN2AP68543 259 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF45Q02386 682 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 GCNT1Q02742 428 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 RBM23Q86U06 439 aaKnown RBP12□□□□□ -0.49
LIMCH1-213ENST00000511496 YIPF7Q8N8F6 280 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 OR8K3Q8NH51 312 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 JOSD2Q8TAC2 188 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 CEP19Q96LK0 163 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC25A23Q9BV35 468 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 OXSMQ9NWU1 459 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 KIF1AQ12756 1690 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 CYP3A7-CYP3A51PA0A087WV96 503 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 LOC100506127A0A0U1RQW1 187 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 BET1O15155 118 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 TNNI1P19237 187 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 CYP3A7P24462 503 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 PIGAP37287 484 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 RPL35P42766 123 aaKnown RBP11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 CENPAP49450 140 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 GHRHRQ02643 423 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 DAG1Q14118 895 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 CLCA4Q14CN2 919 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 HABP4Q5JVS0 413 aaKnown RBP11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 TTC23Q5W5X9 447 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 ABI1Q8IZP0 508 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 HS3ST5Q8IZT8 346 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 CDCA5Q96FF9 252 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 B3GALT6Q96L58 329 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 FRMD8P1Q9BZ68 369 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 KAT8Q9H7Z6 458 aaKnown RBP11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 REV1Q9UBZ9 1251 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 OSGIN1Q9UJX0 560 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 NUP188Q5SRE5 1749 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 USP2O75604 605 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 CSF2P04141 144 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 NPY2RP49146 381 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 NKX3-2P78367 333 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 PADI6Q6TGC4 694 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 KIAA0319LQ8IZA0 1049 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 ARFGAP1Q8N6T3 406 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 PQLC3Q8N755 202 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 PLD5Q8N7P1 536 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 ANKRD52Q8NB46 1076 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 DNAJB14Q8TBM8 379 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 C1orf74Q96LT6 269 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC30A3Q99726 388 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 FAM49BQ9NUQ9 324 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 FAM118AQ9NWS6 357 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 TNFRSF10DQ9UBN6 386 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 SEPT9Q9UHD8 586 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 INTS6Q9UL03 887 aaKnown RBP11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 COQ4Q9Y3A0 265 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 PTPRFP10586 1907 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 SCN11AQ9UI33 1791 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 CACNA1SQ13698 1873 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 METTL15A6NJ78 407 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 NDUFA2O43678 99 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 C2P06681 752 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 DNAJB2P25686 324 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 IRF5Q13568 498 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 CBX2Q14781 532 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 GPR68Q15743 365 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 KIF19Q2TAC6 998 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 QRICH1Q2TAL8 776 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 CYP27C1Q4G0S4 372 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 TYW3Q6IPR3 259 aaKnown RBP11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 CES5AQ6NT32 575 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 VN1R5Q7Z5H4 357 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 SPATA6LQ8N4H0 392 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF606Q8WXB4 792 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 ASB12Q8WXK4 309 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 TMBIM1Q969X1 311 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 WACQ9BTA9 647 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 GHITMQ9H3K2 345 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 CYP3A43Q9HB55 503 aa11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 EVLQ9UI08 416 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 MTF2Q9Y483 593 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-213ENST00000511496 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF98A6NK75 572 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 HNRNPCL2B2RXH8 293 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 CASP2P42575 452 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 ALDH3A2P51648 485 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms