RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	UBAP2L	Q14157	1087 aa	Known RBP	11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	IGFBP7	Q16270	282 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	BOLA3	Q53S33	107 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	HENMT1	Q5T8I9	393 aa	Known RBP	11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	ATP1A1-AS1	Q5TC04	95 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	HGSNAT	Q68CP4	663 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	NCBP2-AS2	Q69YL0	99 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	GALNT13	Q8IUC8	556 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	NRSN1	Q8IZ57	195 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	UNC5B	Q8IZJ1	945 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	NLGN4X	Q8N0W4	816 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	PAF1	Q8N7H5	531 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	EXD1	Q8NHP7	514 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	HSPH1	Q92598	858 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	FATE1	Q969F0	183 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	EID2B	Q96D98	161 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	RIOK2	Q9BVS4	552 aa	Known RBP	11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	ANO10	Q9NW15	660 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	GOLGA6A	Q9NYA3	693 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	PRKAB1	Q9Y478	270 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	SCIN	Q9Y6U3	715 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815	UNC79	Q9P2D8	2635 aa		11.06	□□□□□ -0.64
PTPN7-204	ENST00000462815		K7EM74	188 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	INPP4B	O15327	924 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	STK17B	O94768	372 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	CLDN7	O95471	211 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	C9	P02748	559 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	PYGL	P06737	847 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	MMP2	P08253	660 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	ANKRD34C	P0C6C1	535 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	MYBL1	P10243	752 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	PRKAR1A	P10644	381 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	PTMS	P20962	102 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	NFKBIA	P25963	317 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	ARL4A	P40617	200 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	GARS	P41250	739 aa	Known RBP	11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	STAT5A	P42229	794 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	EPHA4	P54764	986 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	MMRN1	Q13201	1228 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	MAP7	Q14244	749 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	PAFAH1B3	Q15102	231 aa	Known RBP	11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	ASIC2	Q16515	512 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	STX1A	Q16623	288 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	CPNE8	Q86YQ8	564 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	LURAP1L	Q8IV03	231 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	AOPEP	Q8N6M6	819 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	ANKRD20A12P	Q8NF67	263 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	OR10G6	Q8NH81	332 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	ABHD17A	Q96GS6	310 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	BTBD6	Q96KE9	485 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	SLC38A3	Q99624	504 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	ZPBP	Q9BS86	351 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	POLR1E	Q9GZS1	481 aa	Known RBP	11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	GPN2	Q9H9Y4	310 aa	Predicted RBP	11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	RCOR3	Q9P2K3	495 aa	Predicted RBP	11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	MYO1A	Q9UBC5	1043 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	ANAPC2	Q9UJX6	822 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	KCNK6	Q9Y257	313 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	CHKB	Q9Y259	395 aa		11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	MRPS18B	Q9Y676	258 aa	Known RBP	11.05	□□□□□ -0.64
PTPN7-204	ENST00000462815	PRRC2C	Q9Y520	2896 aa	Known RBP	11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	LILRA5	A6NI73	299 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815		A8MU76	341 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	MATN3	O15232	486 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	HLA-DQB2	P05538	268 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	FURIN	P09958	794 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	SKIL	P12757	684 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	F3	P13726	295 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	ZNF28	P17035	718 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	SERPINB6	P35237	376 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	CD97	P48960	835 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	SPINT3	P49223	89 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	CLCNKA	P51800	687 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	GFER	P55789	205 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	NFATC2	Q13469	925 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	DPYSL3	Q14195	570 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	SNAP47	Q5SQN1	464 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	CEACAM20	Q6UY09	585 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	CHST15	Q7LFX5	561 aa	Predicted RBP	11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	LRRC49	Q8IUZ0	686 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	BBS5	Q8N3I7	341 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	C9orf43	Q8TAL5	461 aa	Predicted RBP	11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	STARD8	Q92502	1023 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	NCSTN	Q92542	709 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	MIB2	Q96AX9	1013 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	TRIM11	Q96F44	468 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	TSGA13	Q96PP4	275 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	TBC1D10A	Q9BXI6	508 aa		11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	MRPL47	Q9HD33	250 aa	Known RBP	11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	ZNF71	Q9NQZ8	489 aa	Predicted RBP	11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815	SCHIP1	Q9P0W5	487 aa	Predicted RBP	11.04	□□□□□ -0.64
PTPN7-204	ENST00000462815		A0A1B0GTH6	734 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	GOLGA6L3	A6NEY3	463 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	NUAK1	O60285	661 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	ACP5	P13686	325 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	NR1D1	P20393	614 aa		11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	CDK11B	P21127	795 aa	Known RBP	11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	RPL26	P61254	145 aa	Known RBP	11.03	□□□□□ -0.64
PTPN7-204	ENST00000462815	BIRC2	Q13490	618 aa		11.03	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms