RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 KRT86O43790 486 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 FTCDO95954 541 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 SLC4A1P02730 911 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 ATP1A1P05023 1023 aaKnown RBP22.81■■□□□ 1.24
PTPN4-208ENST00000460289 HLA-DPA1P20036 260 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 AK4P27144 223 aaPredicted RBP22.81■■□□□ 1.24
PTPN4-208ENST00000460289 HMGCLP35914 325 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 GEMP55040 296 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 AADACL2Q6P093 401 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 TRAM1L1Q8N609 369 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 CCDC112Q8NEF3 446 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 IPMKQ8NFU5 416 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 GFM1Q96RP9 751 aaKnown RBP22.81■■□□□ 1.24
PTPN4-208ENST00000460289 GBA3Q9H227 469 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 SYNDIG1Q9H7V2 258 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 ZNHIT2Q9UHR6 403 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 RABGEF1Q9UJ41 708 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 PACSIN2Q9UNF0 486 aaPredicted RBP22.81■■□□□ 1.24
PTPN4-208ENST00000460289 SPO11Q9Y5K1 396 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 ADGRG1Q9Y653 693 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 ARHGAP6O43182 974 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 ZW10O43264 779 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 ACTR1BP42025 376 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 LSSP48449 732 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 ACTR1AP61163 376 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 CCL7P80098 99 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 PRPSAP1Q14558 356 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 SLC1A5Q15758 541 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 SIRPB2Q5JXA9 342 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 ZNF569Q5MCW4 686 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 ANKRD20A2Q5SQ80 823 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 ANKRD20A1Q5TYW2 823 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 ANKRD20A3Q5VUR7 823 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 ALS2CLQ60I27 953 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 C17orf82Q86X59 251 aaPredicted RBP22.8■■□□□ 1.24
PTPN4-208ENST00000460289 SLC25A41Q8N5S1 370 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 HES6Q96HZ4 224 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 FSD1LQ9BXM9 530 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 AAR2Q9Y312 384 aaKnown RBP22.8■■□□□ 1.24
PTPN4-208ENST00000460289 OAS3Q9Y6K5 1087 aaKnown RBP22.8■■□□□ 1.24
PTPN4-208ENST00000460289 RNF215Q9Y6U7 377 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 RP1P56715 2156 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 ZZEF1O43149 2961 aa22.8■■□□□ 1.24
PTPN4-208ENST00000460289 ANKRD11Q6UB99 2663 aaPredicted RBP22.79■■□□□ 1.24
PTPN4-208ENST00000460289 F5H423 210 aaPredicted RBP22.79■■□□□ 1.24
PTPN4-208ENST00000460289 TMX2-CTNND1H3BSU7 103 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 DDX3YO15523 660 aaKnown RBP22.79■■□□□ 1.24
PTPN4-208ENST00000460289 KCNN4O15554 427 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 BRINP1O60477 761 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 DNAJC6O75061 913 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 SLC25A14O95258 325 aaPredicted RBP22.79■■□□□ 1.24
PTPN4-208ENST00000460289 RPLP0P05388 317 aaKnown RBP22.79■■□□□ 1.24
PTPN4-208ENST00000460289 BPIP17213 487 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 ACTN2P35609 894 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 BIRC2Q13490 618 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 ZDHHC20Q5W0Z9 365 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 CCNJLQ8IV13 435 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 SFTPA2Q8IWL1 248 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 PPP1R2P1Q96PQ5 205 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 PLEKHG4BQ96PX9 1271 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 CARD9Q9H257 536 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 LRRN3Q9H3W5 708 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 POLR1BQ9H9Y6 1135 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP22.79■■□□□ 1.24
PTPN4-208ENST00000460289 ENTPD2Q9Y5L3 495 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 ST14Q9Y5Y6 855 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 ACACAQ13085 2346 aa22.79■■□□□ 1.24
PTPN4-208ENST00000460289 RHPN2P1A8MT19 583 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 GPR89AB7ZAQ6 455 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 AURKAO14965 403 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 NUAK1O60285 661 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 ECEL1O95672 775 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 MPOP05164 745 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 GPR89BP0CG08 455 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 ARL14Q8N4G2 192 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 Q8N9G6 341 aaPredicted RBP22.78■■□□□ 1.24
PTPN4-208ENST00000460289 ATXN7L3BQ96GX2 97 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 FAM118BQ9BPY3 351 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 TRIM39Q9HCM9 518 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 GUCA1BQ9UMX6 200 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 PLEKHM1Q9Y4G2 1056 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 CAPN6Q9Y6Q1 641 aa22.78■■□□□ 1.24
PTPN4-208ENST00000460289 APC2O95996 2303 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 A0A1W2PQM1 296 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 CHRNA4P43681 627 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 GABREP78334 506 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 CHST15Q7LFX5 561 aaPredicted RBP22.77■■□□□ 1.24
PTPN4-208ENST00000460289 NAGSQ8N159 534 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 DTX3LQ8TDB6 740 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 BLOC1S5Q8TDH9 187 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 FGF11Q92914 225 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 GLYATL1Q969I3 302 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 LRRC45Q96CN5 670 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 SPATA13Q96N96 652 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 BPIFA1Q9NP55 256 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 ATXN10Q9UBB4 475 aa22.77■■□□□ 1.24
PTPN4-208ENST00000460289 CASC3O15234 703 aaKnown RBP22.76■■□□□ 1.23
PTPN4-208ENST00000460289 GRID2O43424 1007 aa22.76■■□□□ 1.23
PTPN4-208ENST00000460289 PPFIA2O75334 1257 aa22.76■■□□□ 1.23
PTPN4-208ENST00000460289 DXOO77932 396 aaKnown RBP22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms