RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TMC3Q7Z5M5 1100 aa21.53■■□□□ 1.04
CCDC28B-201ENST00000373602 SLITRK4Q8IW52 837 aa21.53■■□□□ 1.04
CCDC28B-201ENST00000373602 CCDC97Q96F63 343 aaPredicted RBP21.53■■□□□ 1.04
CCDC28B-201ENST00000373602 PANX2Q96RD6 677 aa21.53■■□□□ 1.04
CCDC28B-201ENST00000373602 SHOC2Q9UQ13 582 aa21.53■■□□□ 1.04
CCDC28B-201ENST00000373602 PCYT1BQ9Y5K3 369 aaPredicted RBP21.53■■□□□ 1.04
CCDC28B-201ENST00000373602 ZW10O43264 779 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 CPNE6O95741 557 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 PIRTP0C851 137 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 FECHP22830 423 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 CD68P34810 354 aaPredicted RBP21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 GPR3P46089 330 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 UCNP55089 124 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 WASHC5Q12768 1159 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 CLPPQ16740 277 aaPredicted RBP21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 BROXQ5VW32 411 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 P3H4Q92791 437 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 TMEM159Q96B96 161 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 UBL7Q96S82 380 aaPredicted RBP21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 RBSNQ9H1K0 784 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 RMI1Q9H9A7 625 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 RAD18Q9NS91 495 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 NFKBIL1Q9UBC1 381 aaPredicted RBP21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 ZNHIT2Q9UHR6 403 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 SSUH2Q9Y2M2 353 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 ZNF711Q9Y462 761 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 PCDHGA7Q9Y5G6 932 aa21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 EPN1Q9Y6I3 576 aaPredicted RBP21.52■■□□□ 1.04
CCDC28B-201ENST00000373602 PPM1DO15297 605 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 KLK10O43240 276 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 MTSS1O43312 755 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 NDST3O95803 873 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 HGFP14210 728 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 ALDH4A1P30038 563 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 DCDC1P59894 354 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 CXADRP78310 365 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 BIRC2Q13490 618 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 AMZ1Q400G9 498 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 CCDC70Q6NSX1 233 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 GPR155Q7Z3F1 870 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 PIM3Q86V86 326 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 TMTC1Q8IUR5 882 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 GPR26Q8NDV2 337 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 RBM41Q96IZ5 413 aaKnown RBP21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 LOXL2Q9Y4K0 774 aa21.51■■□□□ 1.03
CCDC28B-201ENST00000373602 SOWAHDA6NJG2 315 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 PMPCBO75439 489 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 NDUFA10O95299 355 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 TMPRSS3P57727 454 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 PPP2R5EQ16537 467 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 MAP9Q49MG5 647 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 ZC3H18Q86VM9 953 aaKnown RBP21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 CCDC50Q8IVM0 306 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 KRT35Q92764 455 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 SRPK1Q96SB4 655 aaKnown RBP21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 VAT1Q99536 393 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 ZSCAN5AQ9BUG6 496 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 SPATA16Q9BXB7 569 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 GPR63Q9BZJ6 419 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 CARD9Q9H257 536 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 SEMA6CQ9H3T2 930 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 RDH14Q9HBH5 336 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 UBP1Q9NZI7 540 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 PISDQ9UG56 409 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 FAM153AQ9UHL3 310 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 PRKAB1Q9Y478 270 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 NBEAQ8NFP9 2946 aa21.5■■□□□ 1.03
CCDC28B-201ENST00000373602 TEX51A0A1B0GUA7 166 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 RCCD1A6NED2 376 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 NUAK1O60285 661 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 JMJD7P0C870 316 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 NFKB1P19838 968 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 CD1CP29017 333 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 SLC5A2P31639 672 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 FASLGP48023 281 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 SQSTM1Q13501 440 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 ZNF569Q5MCW4 686 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 ALS2CLQ60I27 953 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 PDPK2PQ6A1A2 396 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 KDELC1Q6UW63 502 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 BBS12Q6ZW61 710 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 USP53Q70EK8 1073 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 CHST15Q7LFX5 561 aaPredicted RBP21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 DAAM2Q86T65 1068 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 SFRP1Q8N474 314 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 TRAM1L1Q8N609 369 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 HAUS1Q96CS2 278 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 CALR3Q96L12 384 aaKnown RBP21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 CMKLR1Q99788 373 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 ATXN10Q9UBB4 475 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 SPO11Q9Y5K1 396 aa21.49■■□□□ 1.03
CCDC28B-201ENST00000373602 ZFC3H1O60293 1989 aaKnown RBP21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 SCN8AQ9UQD0 1980 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 LOC285095A0A1B0GVY8 99 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 HACD1B0YJ81 288 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 EML2O95834 649 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 PHF19Q5T6S3 580 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 ZNF574Q6ZN55 896 aaPredicted RBP21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 JAMLQ86YT9 394 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms