RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 CDH9Q9ULB4 789 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 KCTD3Q9Y597 815 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 NYNRINQ9P2P1 1898 aaKnown RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 ASPDHA6ND91 283 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 PAPSS2O95340 614 aaPredicted RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 PEX11BO96011 259 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 HLCSP50747 726 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 ADARB1P78563 741 aaKnown RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 LIPEQ05469 1076 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 FOXM1Q08050 763 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 NFYCQ13952 458 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 FUT11Q495W5 492 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 PYCR3Q53H96 274 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 ZNF549Q6P9A3 640 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 PTRH1Q86Y79 214 aaKnown RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 GPC2Q8N158 579 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 TERB1Q8NA31 727 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 PAPD5Q8NDF8 572 aaKnown RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 BPIFB6Q8NFQ5 453 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 MYLPFQ96A32 169 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 IMP4Q96G21 291 aaKnown RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 CSF3RQ99062 836 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 TRIM54Q9BYV2 358 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 MFSD1Q9H3U5 465 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 NANOGQ9H9S0 305 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 RIC8BQ9NVN3 520 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 INTS10Q9NVR2 710 aaKnown RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 SLAMF8Q9P0V8 285 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 IFT80Q9P2H3 777 aaPredicted RBP13.39□□□□□ -0.27
SKA3-202ENST00000314759 USP22Q9UPT9 525 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 GPR45Q9Y5Y3 372 aa13.39□□□□□ -0.27
SKA3-202ENST00000314759 KRBA1A5PL33 1030 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 MROH6A6NGR9 719 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 CLASP2O75122 1294 aaKnown RBP13.38□□□□□ -0.27
SKA3-202ENST00000314759 CCNA2P20248 432 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 CES1P23141 567 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 CD86P42081 329 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 PGFP49763 221 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 GRSF1Q12849 480 aaKnown RBP eCLIP13.38□□□□□ -0.27
SKA3-202ENST00000314759 COQ5Q5HYK3 327 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 PAGE3Q5JUK9 113 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 TRUB1Q8WWH5 349 aaKnown RBP13.38□□□□□ -0.27
SKA3-202ENST00000314759 TMEM74Q96NL1 305 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 ASB2Q96Q27 587 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 SLC30A3Q99726 388 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 KCTD14Q9BQ13 255 aaPredicted RBP13.38□□□□□ -0.27
SKA3-202ENST00000314759 NT5MQ9NPB1 228 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 SACM1LQ9NTJ5 587 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 PKD2L2Q9NZM6 624 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 ANAPC2Q9UJX6 822 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 DNAH12Q6ZR08 3092 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 A0A1W2PP18 115 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 H0Y858 1186 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 TREHO43280 583 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 FDXRP22570 491 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 NR4A1P22736 598 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 ELK4P28324 431 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 ECT2LQ008S8 904 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 ITKQ08881 620 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 CCNYL2Q5T2Q4 361 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 C14orf80Q86SX3 495 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 SNX29P2Q8IUI4 249 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 TBC1D21Q8IYX1 336 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 GPRC5AQ8NFJ5 357 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 OR13F1Q8NGS4 319 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 SEPHS2Q99611 448 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 RTP3Q9BQQ7 232 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 NOL6Q9H6R4 1146 aaKnown RBP13.38□□□□□ -0.27
SKA3-202ENST00000314759 FANCEQ9HB96 536 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 TLR9Q9NR96 1032 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 OSER1Q9NX31 292 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 ZNF639Q9UID6 485 aa13.38□□□□□ -0.27
SKA3-202ENST00000314759 CPNE6O95741 557 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 LDLRP01130 860 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 ZFP36L2P47974 494 aaKnown RBP13.37□□□□□ -0.27
SKA3-202ENST00000314759 SPATS1Q496A3 300 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 KIAA2013Q8IYS2 634 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 RTL3Q8N8U3 475 aaKnown RBP13.37□□□□□ -0.27
SKA3-202ENST00000314759 SGCDQ92629 289 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 TAMM41Q96BW9 452 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 MUS81Q96NY9 551 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 KLHL5Q96PQ7 755 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 TUBA1CQ9BQE3 449 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 YTHDF1Q9BYJ9 559 aaKnown RBP13.37□□□□□ -0.27
SKA3-202ENST00000314759 SLC27A5Q9Y2P5 690 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 V9GYQ6 96 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 ANKRD12Q6UB98 2062 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 KPNA6O60684 536 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 MOCS2O96007 188 aaPredicted RBP13.37□□□□□ -0.27
SKA3-202ENST00000314759 MMP2P08253 660 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 CCR1P32246 355 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 IDUAP35475 653 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 FSCN1Q16658 493 aaKnown RBP13.37□□□□□ -0.27
SKA3-202ENST00000314759 FBXO48Q5FWF7 155 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 BRMS1LQ5PSV4 323 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 SNX19Q92543 992 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 TBATAQ96M53 351 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 CYP2S1Q96SQ9 504 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 PAAF1Q9BRP4 392 aa13.37□□□□□ -0.27
SKA3-202ENST00000314759 TMEM9Q9P0T7 183 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms