RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 HNRNPCL3B7ZW38 293 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 CCRL2O00421 344 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 CCL16O15467 120 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 DYRK3O43781 588 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 MGRN1O60291 552 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 MICAL2O94851 1124 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 OR5F1O95221 314 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 HNRNPCL4P0DMR1 293 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 GABRB2P47870 512 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 MAZP56270 477 aaKnown RBP8.16□□□□□ -1.1
VPS41-202ENST00000310301 ILF2Q12905 390 aaKnown RBP8.16□□□□□ -1.1
VPS41-202ENST00000310301 SLC34A3Q8N130 599 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 RBM15BQ8NDT2 890 aaKnown RBP8.16□□□□□ -1.1
VPS41-202ENST00000310301 OMDQ99983 421 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 C1QTNF1Q9BXJ1 281 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 DENND2DQ9H6A0 471 aaPredicted RBP8.16□□□□□ -1.1
VPS41-202ENST00000310301 ABCC13Q9NSE7 274 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 BLOC1S4Q9NUP1 217 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 IRAK3Q9Y616 596 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 ITGB4P16144 1822 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 STX16-NPEPL1H3BU86 382 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 CBX4O00257 560 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 STX16O14662 325 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 LRIG2O94898 1065 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 METTL18O95568 372 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 PAEPP09466 180 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 FGFR1P11362 822 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 GNSP15586 552 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 KDELR1P24390 212 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 ATP5F1P24539 256 aaPredicted RBP8.16□□□□□ -1.1
VPS41-202ENST00000310301 MIPP30301 263 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 SDC2P34741 201 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 CCNFP41002 786 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 UGT2B15P54855 530 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 ECT2LQ008S8 904 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 ENPEPQ07075 957 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 SMCO1Q147U7 214 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 C12orf56Q8IXR9 622 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 PTGR2Q8N8N7 351 aaPredicted RBP8.16□□□□□ -1.1
VPS41-202ENST00000310301 ZBTB8BQ8NAP8 495 aaPredicted RBP8.16□□□□□ -1.1
VPS41-202ENST00000310301 REPS1Q96D71 796 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 TBCBQ99426 244 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 RACGAP1Q9H0H5 632 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 DHX33Q9H6R0 707 aaKnown RBP8.16□□□□□ -1.1
VPS41-202ENST00000310301 CAB39LQ9H9S4 337 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 CXorf21Q9HAI6 301 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 TAS2R14Q9NYV8 317 aa8.16□□□□□ -1.1
VPS41-202ENST00000310301 A0A087X0B3 334 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 PCDH8O95206 1070 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 HNRNPA1P09651 372 aaKnown RBP eCLIP8.15□□□□□ -1.1
VPS41-202ENST00000310301 HGFP14210 728 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 TUBA1BP68363 451 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 IRAK1BP1Q5VVH5 260 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 WSCD1Q658N2 575 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 SULT1C3Q6IMI6 304 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 UNC5AQ6ZN44 842 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 PRR23CQ6ZRP0 262 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 TUBA1AQ71U36 451 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 GLT6D1Q7Z4J2 308 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 THAP5Q7Z6K1 395 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 SPPL2CQ8IUH8 684 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 TBC1D21Q8IYX1 336 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 ITFG2Q969R8 447 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 C1GALT1C1Q96EU7 318 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 HSD17B14Q9BPX1 270 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 TRMT61BQ9BVS5 477 aaKnown RBP8.15□□□□□ -1.1
VPS41-202ENST00000310301 HES2Q9Y543 173 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 F8VP50 259 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 RGS10O43665 173 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 TRIM3O75382 744 aaPredicted RBP8.15□□□□□ -1.1
VPS41-202ENST00000310301 ZNF7P17097 686 aaPredicted RBP8.15□□□□□ -1.1
VPS41-202ENST00000310301 EIF2S3P41091 472 aaKnown RBP8.15□□□□□ -1.1
VPS41-202ENST00000310301 ZNF135P52742 658 aaPredicted RBP8.15□□□□□ -1.1
VPS41-202ENST00000310301 RAB2AP61019 212 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 VBP1P61758 197 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 SCN1BQ07699 218 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 ACSM2AQ08AH3 577 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 BOP1Q14137 746 aaKnown RBP8.15□□□□□ -1.1
VPS41-202ENST00000310301 TAF13Q15543 124 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 ACSM2BQ68CK6 577 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 TAPT1Q6NXT6 567 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 SERPINA13PQ6UXR4 307 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 RNF44Q7L0R7 432 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 SLC51AQ86UW1 340 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 LSM14AQ8ND56 463 aaKnown RBP8.15□□□□□ -1.1
VPS41-202ENST00000310301 KBTBD7Q8WVZ9 684 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 TUBGCP5Q96RT8 1024 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 BHLHE41Q9C0J9 482 aaPredicted RBP8.15□□□□□ -1.1
VPS41-202ENST00000310301 EBF3Q9H4W6 596 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 ZDHHC4Q9NPG8 344 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 U3KQV3 271 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 KDM3BQ7LBC6 1761 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 FAM47E-STBD1D6RA91 191 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 TUBA3CQ13748 450 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 SUZ12Q15022 739 aaKnown RBP8.15□□□□□ -1.1
VPS41-202ENST00000310301 PDCD4Q53EL6 469 aaKnown RBP8.15□□□□□ -1.1
VPS41-202ENST00000310301 HYIQ5T013 277 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 LIPMQ5VYY2 423 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 GK5Q6ZS86 529 aa8.15□□□□□ -1.1
VPS41-202ENST00000310301 C1orf186Q6ZWK4 172 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms