RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-228	ENST00000637325	MARK2	Q7KZI7	788 aa	Known RBP	13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	PID1	Q7Z2X4	250 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	LYSMD3	Q7Z3D4	306 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	TRIM74	Q86UV6	250 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325		Q8N9G6	341 aa	Predicted RBP	13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	GPR156	Q8NFN8	814 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	GPBAR1	Q8TDU6	330 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	ZDHHC1	Q8WTX9	485 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	GRAMD1A	Q96CP6	724 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	DCBLD2	Q96PD2	775 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	OR2M4	Q96R27	311 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	SRPK1	Q96SB4	655 aa	Known RBP	13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	VAT1	Q99536	393 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	GPR63	Q9BZJ6	419 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	LACRT	Q9GZZ8	138 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	CDH19	Q9H159	772 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	TAAR2	Q9P1P5	351 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	FAM153A	Q9UHL3	310 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	AMFR	Q9UKV5	643 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	SHOC2	Q9UQ13	582 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	CFAP47	Q6ZTR5	3102 aa		13.73	□□□□□ -0.21
PNKP-228	ENST00000637325	CHD6	Q8TD26	2715 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	APOC4-APOC2	K7ER74	178 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	PJA2	O43164	708 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	NOBOX	O60393	691 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	NDST3	O95803	873 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	APOC2	P02655	101 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	FUCA1	P04066	466 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	MPO	P05164	745 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	RPLP0	P05388	317 aa	Known RBP	13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	PTMA	P06454	111 aa	Known RBP	13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	GLB1	P16278	677 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	NFKB1	P19838	968 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	AK4	P27144	223 aa	Predicted RBP	13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	ADCY8	P40145	1251 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	RWDD2B	P57060	319 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	GABRE	P78334	506 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	CCL7	P80098	99 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	CTBS	Q01459	385 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	WASHC5	Q12768	1159 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	XRCC4	Q13426	336 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	ALS2CL	Q60I27	953 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	OGFOD3	Q6PK18	319 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	C19orf48	Q6RUI8	117 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	LRRC69	Q6ZNQ3	347 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	GALNT13	Q8IUC8	556 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	LSMEM2	Q8N112	164 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	HTR3C	Q8WXA8	447 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	QKI	Q96PU8	341 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	GFM1	Q96RP9	751 aa	Known RBP	13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	TRIB3	Q96RU7	358 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	SPATA16	Q9BXB7	569 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	OSBPL8	Q9BZF1	889 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	LRRN3	Q9H3W5	708 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	MAGEE1	Q9HCI5	957 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	RAD18	Q9NS91	495 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	SPATS2L	Q9NUQ6	558 aa	Known RBP	13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	LRIT1	Q9P2V4	623 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	ZNHIT2	Q9UHR6	403 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325	ZNF711	Q9Y462	761 aa		13.72	□□□□□ -0.21
PNKP-228	ENST00000637325		F5H423	210 aa	Predicted RBP	13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	RRP8	O43159	456 aa	Known RBP	13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	CD68	P34810	354 aa	Predicted RBP	13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	ACTR1B	P42025	376 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	LSS	P48449	732 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	WNT3A	P56704	352 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	ACTR1A	P61163	376 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	C3orf38	Q5JPI3	329 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	CERCAM	Q5T4B2	595 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	HENMT1	Q5T8I9	393 aa	Known RBP	13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	PEX26	Q7Z412	305 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	NRROS	Q86YC3	692 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	CCNJL	Q8IV13	435 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	SYCE1	Q8N0S2	351 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	ZNF567	Q8N184	647 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	PTCD2	Q8WV60	388 aa	Known RBP	13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	FGF11	Q92914	225 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	TADA1	Q96BN2	335 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	SCARF2	Q96GP6	870 aa	Predicted RBP	13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	ATXN7L3B	Q96GX2	97 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	COX14	Q96I36	57 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	DESI2	Q9BSY9	194 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	POLR1B	Q9H9Y6	1135 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	RSPH14	Q9UHP6	348 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	RABGEF1	Q9UJ41	708 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	TRHDE	Q9UKU6	1024 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	LHX6	Q9UPM6	363 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	EFR3B	Q9Y2G0	817 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	ENTPD2	Q9Y5L3	495 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	RNF215	Q9Y6U7	377 aa		13.71	□□□□□ -0.21
PNKP-228	ENST00000637325	GRID2IP	A4D2P6	1211 aa		13.7	□□□□□ -0.22
PNKP-228	ENST00000637325	RHPN2P1	A8MT19	583 aa		13.7	□□□□□ -0.22
PNKP-228	ENST00000637325	FADS2P1	A8MWK0	482 aa		13.7	□□□□□ -0.22
PNKP-228	ENST00000637325	TMX2-CTNND1	H3BSU7	103 aa		13.7	□□□□□ -0.22
PNKP-228	ENST00000637325	NTN3	O00634	580 aa	Predicted RBP	13.7	□□□□□ -0.22
PNKP-228	ENST00000637325	CASC3	O15234	703 aa	Known RBP	13.7	□□□□□ -0.22
PNKP-228	ENST00000637325	ZW10	O43264	779 aa		13.7	□□□□□ -0.22
PNKP-228	ENST00000637325	TLX3	O43711	291 aa	Predicted RBP	13.7	□□□□□ -0.22
PNKP-228	ENST00000637325	NUDT21	O43809	227 aa	Known RBP	13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms