RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	UGP2	Q16851	508 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	FNDC3B	Q53EP0	1204 aa	Known RBP	11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	HABP4	Q5JVS0	413 aa	Known RBP	11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	NAIF1	Q69YI7	327 aa	Predicted RBP	11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	AAGAB	Q6PD74	315 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	CES3	Q6UWW8	571 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	ADGRG6	Q86SQ4	1221 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	TREML1	Q86YW5	311 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	SCUBE1	Q8IWY4	988 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	SLC44A3	Q8N4M1	653 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	PAF1	Q8N7H5	531 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	RBM15B	Q8NDT2	890 aa	Known RBP	11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	BRSK1	Q8TDC3	778 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	ZNF669	Q96BR6	464 aa	Predicted RBP	11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	CMTM5	Q96DZ9	223 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	CHFR	Q96EP1	664 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	ZNF641	Q96N77	438 aa	Predicted RBP	11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	ANGPTL2	Q9UKU9	493 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	FAM50B	Q9Y247	325 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	DNAJC16	Q9Y2G8	782 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	PSAT1	Q9Y617	370 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341		A0A1W2PQ67	120 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	NVL	O15381	856 aa	Known RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	FKBP6	O75344	327 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	PAPSS2	O95340	614 aa	Predicted RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	PIGN	O95427	931 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	ERVK-10	P10266	1014 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	ADSL	P30566	484 aa	Predicted RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	GK	P32189	559 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	GRIA4	P48058	902 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	ACTR3	P61158	418 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	MRPS35	P82673	323 aa	Known RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	KPNB1	Q14974	876 aa	Known RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	CCDC6	Q16204	474 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	PUS10	Q3MIT2	529 aa	Known RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	FSTL4	Q6MZW2	842 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	STRA8	Q7Z7C7	330 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	CNTN4	Q8IWV2	1026 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	UNC5B	Q8IZJ1	945 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	DCLK2	Q8N568	766 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	BLOC1S5	Q8TDH9	187 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	DNAJC9	Q8WXX5	260 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	PEX13	Q92968	403 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	MIEF2	Q96C03	454 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	MFSD3	Q96ES6	412 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	PRR11	Q96HE9	360 aa	Predicted RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	FCRL3	Q96P31	734 aa	Predicted RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	SORT1	Q99523	831 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	GPR22	Q99680	433 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	P2RY13	Q9BPV8	354 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	HEPH	Q9BQS7	1158 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	ZDHHC6	Q9H6R6	413 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	MRGBP	Q9NV56	204 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	TMEM216	Q9P0N5	145 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	ARMCX1	Q9P291	453 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	LRCH1	Q9Y2L9	728 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	EYS	Q5T1H1	3165 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	MROH6	A6NGR9	719 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	ZNF195	O14628	629 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	CRTAM	O95727	393 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	ENO1	P06733	434 aa	Known RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	PAM	P19021	973 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	NMBR	P28336	390 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	SOX9	P48436	509 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	GALK1	P51570	392 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	ZNF234	Q14588	700 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	RCN1	Q15293	331 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	TSTD2	Q5T7W7	516 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	PTCRA	Q6ISU1	281 aa	Predicted RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	KCNMB4	Q86W47	210 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	C10orf107	Q8IVU9	208 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	CHST14	Q8NCH0	376 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	PPFIBP2	Q8ND30	876 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	PIH1D2	Q8WWB5	315 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	DNASE1L2	Q92874	299 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	LRIG1	Q96JA1	1093 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	ZNF778	Q96MU6	729 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	RHOJ	Q9H4E5	214 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	SUV39H2	Q9H5I1	410 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	C8orf33	Q9H7E9	229 aa	Predicted RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	HACD3	Q9P035	362 aa		11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	CORO1C	Q9ULV4	474 aa	Predicted RBP	11.67	□□□□□ -0.54
VRK3-223	ENST00000601341	UNC80	Q8N2C7	3258 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	EDDM13	A0A1B0GTR0	161 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	C2orf81	A6NN90	581 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	PRR5-ARHGAP8	B1AHC4	643 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	SLCO1B7	G3V0H7	640 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	LDB2	O43679	373 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	TRIM13	O60858	407 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	SIN3B	O75182	1162 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	PIRT	P0C851	137 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	KCNA4	P22459	653 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	CTH	P32929	405 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	CPOX	P36551	454 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	TNFRSF4	P43489	277 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	IDH3A	P50213	366 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	COPA	P53621	1224 aa		11.66	□□□□□ -0.54
VRK3-223	ENST00000601341	ARHGAP8	P85298	464 aa		11.66	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms