RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 APOBEC2Q9Y235 224 aaKnown RBP11.84□□□□□ -0.51
LIG3-213ENST00000590630 DRG1Q9Y295 367 aaKnown RBP11.84□□□□□ -0.51
LIG3-213ENST00000590630 SLC17A4Q9Y2C5 497 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 PTPRBP23467 1997 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 MED19A0JLT2 244 aaPredicted RBP11.83□□□□□ -0.52
LIG3-213ENST00000590630 ERI2A8K979 691 aaKnown RBP11.83□□□□□ -0.52
LIG3-213ENST00000590630 PGRMC1O00264 195 aaKnown RBP11.83□□□□□ -0.52
LIG3-213ENST00000590630 TRIM38O00635 465 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 CES2O00748 559 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 AURKAO14965 403 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 SIGLEC6O43699 453 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 TRIM16O95361 564 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 AP2A1O95782 977 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 CEACAM5P06731 702 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 FTH1P19P0C7X4 201 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 GIMD1P0DJR0 217 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 BPIP17213 487 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 FDFT1P37268 417 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 PROX2Q3B8N5 592 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 ZCCHC8Q6NZY4 707 aaKnown RBP11.83□□□□□ -0.52
LIG3-213ENST00000590630 LVRNQ6Q4G3 990 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 C4orf22Q6V702 233 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 RD3Q7Z3Z2 195 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 TTC30BQ8N4P2 665 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 FAM181AQ8N9Y4 354 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 GPR26Q8NDV2 337 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 SCG3Q8WXD2 468 aaKnown RBP11.83□□□□□ -0.52
LIG3-213ENST00000590630 COX14Q96I36 57 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 OSBPL9Q96SU4 736 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 AGAP2Q99490 1192 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 SPATA16Q9BXB7 569 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 CAAP1Q9H8G2 361 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 CYP4F12Q9HCS2 524 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 EVA1BQ9NVM1 165 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 TOR4AQ9NXH8 423 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.83□□□□□ -0.52
LIG3-213ENST00000590630 PAK5Q9P286 719 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 SNX12Q9UMY4 172 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 PKP3Q9Y446 797 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 CHD8Q9HCK8 2581 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 KNTC1P50748 2209 aa11.83□□□□□ -0.52
LIG3-213ENST00000590630 ASXL3Q9C0F0 2248 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 AKAP13Q12802 2813 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 C2orf81A6NN90 581 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 FADS2P1A8MWK0 482 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 USP12O75317 370 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 DKK1O94907 266 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 IVLP07476 585 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 ANXA6P08133 673 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 CDK4P11802 303 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 CKMT2P17540 419 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 PDE1BQ01064 536 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 OLIG2Q13516 323 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 TAF1AQ15573 450 aaPredicted RBP11.82□□□□□ -0.52
LIG3-213ENST00000590630 DEFB133Q30KQ1 61 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 ALS2CLQ60I27 953 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 KCTD16Q68DU8 428 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 DENND5AQ6IQ26 1287 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 GSTA5Q7RTV2 222 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 LINC00523Q86TU6 105 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 GKN2Q86XP6 184 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 TRAM1L1Q8N609 369 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 PDCD7Q8N8D1 485 aaKnown RBP11.82□□□□□ -0.52
LIG3-213ENST00000590630 PRELID2Q8N945 189 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 DTX3LQ8TDB6 740 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 BRSK1Q8TDC3 778 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 ACTRT1Q8TDG2 376 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 SCARF2Q96GP6 870 aaPredicted RBP11.82□□□□□ -0.52
LIG3-213ENST00000590630 C19orf43Q9BQ61 176 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 APOL2Q9BQE5 337 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 CLPBQ9H078 707 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 CARS2Q9HA77 564 aaKnown RBP11.82□□□□□ -0.52
LIG3-213ENST00000590630 MRPL40Q9NQ50 206 aaKnown RBP11.82□□□□□ -0.52
LIG3-213ENST00000590630 TRNAU1APQ9NX07 287 aaKnown RBP11.82□□□□□ -0.52
LIG3-213ENST00000590630 IL17CQ9P0M4 197 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 VPS18Q9P253 973 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 MOSPD1Q9UJG1 213 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 CNOT6Q9ULM6 557 aaKnown RBP11.82□□□□□ -0.52
LIG3-213ENST00000590630 DOLKQ9UPQ8 538 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 PCDHGA1Q9Y5H4 931 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 FRYQ5TBA9 3013 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 PLXNB3Q9ULL4 1909 aa11.82□□□□□ -0.52
LIG3-213ENST00000590630 RP1P56715 2156 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 E7EVH7 732 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 INPP4BO15327 924 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 YY2O15391 372 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 CRTAMO95727 393 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 CKMT1AP12532 417 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 TCP1P17987 556 aaKnown RBP11.81□□□□□ -0.52
LIG3-213ENST00000590630 LPOP22079 712 aaPredicted RBP11.81□□□□□ -0.52
LIG3-213ENST00000590630 ACP1P24666 158 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 PMLP29590 882 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 SPAM1P38567 509 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 ACADVLP49748 655 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 GNG11P61952 73 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 DAB2P98082 770 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 ILKQ13418 452 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 MSLNQ13421 630 aaPredicted RBP11.81□□□□□ -0.52
LIG3-213ENST00000590630 C1orf61Q13536 156 aa11.81□□□□□ -0.52
LIG3-213ENST00000590630 SEMA5AQ13591 1074 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms