RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 UBA1P22314 1058 aaKnown RBP4.51□□□□□ -1.69
SCFD1-221ENST00000556534 NLRP5P59047 1200 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 TAS2R38P59533 333 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 RELQ04864 619 aaPredicted RBP4.51□□□□□ -1.69
SCFD1-221ENST00000556534 GOLGA8DPQ0D2H9 430 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 NIPAL4Q0D2K0 466 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 KCNT1Q5JUK3 1230 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 HAUS3Q68CZ6 603 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 WBP2NLQ6ICG8 309 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 TMEM219Q86XT9 240 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 ZNF34Q8IZ26 560 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 NAGSQ8N159 534 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 RFLNBQ8N5W9 214 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 HDAC2Q92769 488 aaKnown RBP4.51□□□□□ -1.69
SCFD1-221ENST00000556534 ARHGEF2Q92974 986 aaKnown RBP4.51□□□□□ -1.69
SCFD1-221ENST00000556534 PCYT2Q99447 389 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 CMKLR1Q99788 373 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 CSTL1Q9H114 145 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 RETREG1Q9H6L5 497 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 KLHL1Q9NR64 748 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 DIAPH3Q9NSV4 1193 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 LOXL2Q9Y4K0 774 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 CLIC4Q9Y696 253 aa4.51□□□□□ -1.69
SCFD1-221ENST00000556534 CGNL1Q0VF96 1302 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 PDS5AQ29RF7 1337 aaKnown RBP4.5□□□□□ -1.69
SCFD1-221ENST00000556534 C1orf226A1L170 272 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 SLC25A12O75746 678 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 BAIAP3O94812 1187 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 DDX58O95786 925 aaKnown RBP4.5□□□□□ -1.69
SCFD1-221ENST00000556534 CDH2P19022 906 aaPredicted RBP4.5□□□□□ -1.69
SCFD1-221ENST00000556534 CORO1AP31146 461 aaKnown RBP4.5□□□□□ -1.69
SCFD1-221ENST00000556534 TMPOP42166 694 aaKnown RBP4.5□□□□□ -1.69
SCFD1-221ENST00000556534 FOXM1Q08050 763 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 DECR1Q16698 335 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 ZNF718Q3SXZ3 478 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 FAM76BQ5HYJ3 339 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 BRAT1Q6PJG6 821 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 UNQ6126/PRO20091Q6UXV3 157 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 TUBA1AQ71U36 451 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 ACVR1CQ8NER5 493 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 PPHLN1Q8NEY8 458 aaKnown RBP4.5□□□□□ -1.69
SCFD1-221ENST00000556534 HMGCLL1Q8TB92 370 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 SLC20A1Q8WUM9 679 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 APBB2Q92870 758 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 ABTB1Q969K4 478 aaPredicted RBP4.5□□□□□ -1.69
SCFD1-221ENST00000556534 TAAR8Q969N4 342 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 C1orf74Q96LT6 269 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 HARBI1Q96MB7 349 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 TUBA1CQ9BQE3 449 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 LRRC4Q9HBW1 653 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 KRT84Q9NSB2 600 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 TMEM30AQ9NV96 361 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 EHD2Q9NZN4 543 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 SCN5AQ14524 2016 aa4.5□□□□□ -1.69
SCFD1-221ENST00000556534 IFITM10A6NMD0 228 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 A8MZ25 164 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 SPINT2O43291 252 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 BUB3O43684 328 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 ITGA2P17301 1181 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 CAPN3P20807 821 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 NFKBIAP25963 317 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 UBA7P41226 1012 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 APOBEC1P41238 236 aaKnown RBP4.49□□□□□ -1.69
SCFD1-221ENST00000556534 RXRGP48443 463 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 DLX5P56178 289 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 ZBED6P86452 979 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 SETQ01105 290 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-221ENST00000556534 ZNF672Q499Z4 452 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-221ENST00000556534 GPATCH4Q5T3I0 446 aaKnown RBP4.49□□□□□ -1.69
SCFD1-221ENST00000556534 TMED8Q6PL24 325 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-221ENST00000556534 ZNF771Q7L3S4 317 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-221ENST00000556534 SFR1Q86XK3 245 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 NGEFQ8N5V2 710 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 OR5R1Q8NH85 324 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 BBS10Q8TAM1 723 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 SGCDQ92629 289 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 MTERF1Q99551 399 aaKnown RBP4.49□□□□□ -1.69
SCFD1-221ENST00000556534 EVA1AQ9H8M9 152 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 PLEKHA5Q9HAU0 1116 aa4.49□□□□□ -1.69
SCFD1-221ENST00000556534 CWC15Q9P013 229 aaKnown RBP4.49□□□□□ -1.69
SCFD1-221ENST00000556534 CNTNAP2Q9UHC6 1331 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 PI4KAP2A4QPH2 592 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 LILRA5A6NI73 299 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 M0QZ24 198 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 ATP2A1O14983 1001 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 EIF5BO60841 1220 aaKnown RBP4.48□□□□□ -1.69
SCFD1-221ENST00000556534 NDUFS3O75489 264 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 JRKO75564 520 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 RNASEH2AO75792 299 aaKnown RBP4.48□□□□□ -1.69
SCFD1-221ENST00000556534 MYOD1P15172 320 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 DGKAP23743 735 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 MCM3P25205 808 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 TM4SF1P30408 202 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 MAPK4P31152 587 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 USP8P40818 1118 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 TAS2R40P59535 323 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 KRTAP10-9P60411 292 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 MRPS34P82930 218 aaKnown RBP4.48□□□□□ -1.69
SCFD1-221ENST00000556534 GRIK2Q13002 908 aa4.48□□□□□ -1.69
SCFD1-221ENST00000556534 ZRSR1Q15695 479 aaKnown RBP4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms