RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 IKZF3Q9UKT9 509 aa8.68□□□□□ -1.02
UBE3B-208ENST00000538070 PCDHGB4Q9UN71 923 aa8.68□□□□□ -1.02
UBE3B-208ENST00000538070 PCDHGB5Q9Y5G0 923 aa8.68□□□□□ -1.02
UBE3B-208ENST00000538070 CDH23Q9H251 3354 aa8.68□□□□□ -1.02
UBE3B-208ENST00000538070 SCN4AP35499 1836 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 A0A0J9YYE9 177 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 H7C4K7 107 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CLGNO14967 610 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 AZIN1O14977 448 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CACNG3O60359 315 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 SH3BGRLO75368 114 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ZNF189O75820 626 aaPredicted RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 TMCC1O94876 653 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ALDH1A1P00352 501 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ALOX15P16050 662 aaPredicted RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 NCK1P16333 377 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 HLA-DPA1P20036 260 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 NOGQ13253 232 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 EIF4EBP2Q13542 120 aaPredicted RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 IRF5Q13568 498 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 USP41Q3LFD5 358 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ZNF678Q5SXM1 525 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 PGM2L1Q6PCE3 622 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 SLC22A9Q8IVM8 553 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CNTN4Q8IWV2 1026 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 SPDYE1Q8NFV5 336 aaPredicted RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 PPP2R3CQ969Q6 453 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 DCUN1D1Q96GG9 259 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 KLHL32Q96NJ5 620 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CIB1Q99828 191 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 GSTO2Q9H4Y5 243 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CROTQ9UKG9 612 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ANGPTL3Q9Y5C1 460 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 RANBP2P49792 3224 aaKnown RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 RALGAPA2Q2PPJ7 1873 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ZNF840PA6NDX5 716 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 NPHS1O60500 1241 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ECI2O75521 394 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CDK14O94921 469 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ATP5BP06576 529 aaKnown RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CNPP09543 421 aaKnown RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CD1DP15813 335 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CKMT2P17540 419 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 IMPDH1P20839 514 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 HOXD9P28356 352 aaPredicted RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 GDF5P43026 501 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 APLP1P51693 650 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ZNF33AQ06730 810 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 TSTA3Q13630 321 aaPredicted RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 VEPH1Q14D04 833 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 PDK3Q15120 406 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 UGT3A1Q6NUS8 523 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 EP400NLQ6ZTU2 488 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 DET1Q7L5Y6 550 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CDC26Q8NHZ8 85 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 JADE3Q92613 823 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 NMD3Q96D46 503 aaKnown RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CCDC126Q96EE4 140 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 PRICKLE1Q96MT3 831 aaPredicted RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 PPP1R2P1Q96PQ5 205 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 NOL11Q9H8H0 719 aaKnown RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 DNAJC15Q9Y5T4 150 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 KNL1Q8NG31 2342 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ZBBXA8MT70 800 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 NRP2O60462 931 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 VPS26AO75436 327 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 STC2O76061 302 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ZNF37AP17032 561 aaPredicted RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 YBEYP58557 167 aaPredicted RBP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 CLCQ05315 142 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 LYSMD3Q7Z3D4 306 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 SPPL2CQ8IUH8 684 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 PGAM4Q8N0Y7 254 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 SEPHS2Q99611 448 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.67□□□□□ -1.02
UBE3B-208ENST00000538070 ZNHIT2Q9UHR6 403 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 PKP3Q9Y446 797 aa8.67□□□□□ -1.02
UBE3B-208ENST00000538070 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.66□□□□□ -1.02
UBE3B-208ENST00000538070 TYW5A2RUC4 315 aaKnown RBP8.66□□□□□ -1.02
UBE3B-208ENST00000538070 RNASEH2AO75792 299 aaKnown RBP8.66□□□□□ -1.02
UBE3B-208ENST00000538070 OR4F21O95013 312 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 RPLP2P05387 115 aaKnown RBP8.66□□□□□ -1.02
UBE3B-208ENST00000538070 ACRP10323 421 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 LPOP22079 712 aaPredicted RBP8.66□□□□□ -1.02
UBE3B-208ENST00000538070 STC1P52823 247 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 TRAF2Q12933 501 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 MSLNQ13421 630 aaPredicted RBP8.66□□□□□ -1.02
UBE3B-208ENST00000538070 ZNF423Q2M1K9 1284 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 TIGD2Q4W5G0 525 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 C6orf10Q5SRN2 563 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 AFMIDQ63HM1 303 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 ANKS6Q68DC2 871 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 SETD3Q86TU7 594 aaPredicted RBP8.66□□□□□ -1.02
UBE3B-208ENST00000538070 CCDC117Q8IWD4 279 aaPredicted RBP8.66□□□□□ -1.02
UBE3B-208ENST00000538070 ZNF683Q8IZ20 524 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 ST13P4Q8IZP2 240 aaPredicted RBP8.66□□□□□ -1.02
UBE3B-208ENST00000538070 CLYBLQ8N0X4 340 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 MYO1HQ8N1T3 1032 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 FNDC5Q8NAU1 212 aa8.66□□□□□ -1.02
UBE3B-208ENST00000538070 PRPF18Q99633 342 aaKnown RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms