RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 PITRM1Q5JRX3 1037 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 ALG1LQ6GMV1 187 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 HACD2Q6Y1H2 254 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 HERC6Q8IVU3 1022 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 ZNF513Q8N8E2 541 aaPredicted RBP13.11□□□□□ -0.31
LDLR-203ENST00000535915 STAG3L4Q8TBR4 150 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 ROPN1LQ96C74 230 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 TUBGCP3Q96CW5 907 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 DTNBP1Q96EV8 351 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 IL1RL2Q9HB29 575 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 UBA2Q9UBT2 640 aaPredicted RBP13.11□□□□□ -0.31
LDLR-203ENST00000535915 RIMKLBQ9ULI2 386 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 LZTS1Q9Y250 596 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 SNX13Q9Y5W8 968 aa13.11□□□□□ -0.31
LDLR-203ENST00000535915 NDUFS3O75489 264 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 RGRP47804 291 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 ZNF140P52738 457 aaPredicted RBP13.1□□□□□ -0.31
LDLR-203ENST00000535915 FBXO48Q5FWF7 155 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 RTP2Q5QGT7 225 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 C6orf10Q5SRN2 563 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 KANK2Q63ZY3 851 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 C8orf82Q6P1X6 216 aaPredicted RBP13.1□□□□□ -0.31
LDLR-203ENST00000535915 FBXO39Q8N4B4 442 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 PBXIP1Q96AQ6 731 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 SEMA4BQ9NPR2 832 aaPredicted RBP13.1□□□□□ -0.31
LDLR-203ENST00000535915 BTRCQ9Y297 605 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 SLC38A8A6NNN8 435 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 BBIP1A8MTZ0 92 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 KERAO60938 352 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 TNFAIP8O95379 198 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 CLPTM1O96005 669 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 ZDHHC11BP0C7U3 371 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 LINC00032P0C843 101 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 HSPA8P11142 646 aaKnown RBP13.1□□□□□ -0.31
LDLR-203ENST00000535915 ATP5C1P36542 298 aaKnown RBP13.1□□□□□ -0.31
LDLR-203ENST00000535915 TM4SF4P48230 202 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 OXCT1P55809 520 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 RPS24P62847 133 aaKnown RBP13.1□□□□□ -0.31
LDLR-203ENST00000535915 CLCQ05315 142 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 RAD51Q06609 339 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 MTA1Q13330 715 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 VPS26BQ4G0F5 336 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 FUT10Q6P4F1 479 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 IYDQ6PHW0 289 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 RETREG3Q86VR2 466 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 DHFR2Q86XF0 187 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 MIER2Q8N344 545 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 KIAA1191Q96A73 305 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 SLCO4A1Q96BD0 722 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 LRCH3Q96II8 777 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 NSMCE3Q96MG7 304 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 PSKH2Q96QS6 385 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 MARCH5Q9NX47 278 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 DNMT3LQ9UJW3 386 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 CNOT11Q9UKZ1 510 aaKnown RBP13.1□□□□□ -0.31
LDLR-203ENST00000535915 PCDHB7Q9Y5E2 793 aa13.1□□□□□ -0.31
LDLR-203ENST00000535915 TCRBV3S1A0A5B6 114 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 C9JVG2 144 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 ANGPT2O15123 496 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 INSIG1O15503 277 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 CRCPO75575 148 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 ETS2P15036 469 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 ZNF26P17031 533 aaPredicted RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 ATF6P18850 670 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 SLC7A1P30825 629 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 SLC11A1P49279 550 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 MYBPC1Q00872 1141 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 LCP2Q13094 533 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 RPS6KA2Q15349 733 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 AFTPHQ6ULP2 937 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 MDGA1Q8NFP4 955 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 SMIM14Q96QK8 99 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 EFHD1Q9BUP0 239 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 DERL2Q9GZP9 239 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 TUBB1Q9H4B7 451 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 COQ10BQ9H8M1 238 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 SCUBE2Q9NQ36 999 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 COMMD8Q9NX08 183 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 RNF186Q9NXI6 227 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 HACD3Q9P035 362 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 GMPR2Q9P2T1 348 aaKnown RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 MOXD2PA6NHM9 499 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 NCF1BA6NI72 391 aaPredicted RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 C2orf81A6NN90 581 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 NCF1CA8MVU1 366 aaPredicted RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 COQ9O75208 318 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 OR6B1O95007 311 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 FAM58BPP0C7Q3 252 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 HGFP14210 728 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 NCF1P14598 390 aaPredicted RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 LBPP18428 481 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 SLC11A2P49281 568 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 CDH4P55283 916 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 TSNQ15631 228 aaKnown RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 DENND1CQ8IV53 801 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 AHI1Q8N157 1196 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 NAT14Q8WUY8 206 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 PPWD1Q96BP3 646 aaKnown RBP13.09□□□□□ -0.31
LDLR-203ENST00000535915 GPR21Q99679 349 aa13.09□□□□□ -0.31
LDLR-203ENST00000535915 POLG2Q9UHN1 485 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms