RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 RBM42Q9BTD8 480 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 MCMBPQ9BTE3 642 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MED10Q9BTT4 135 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SEZ6LQ9BYH1 1024 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 INO80BQ9C086 356 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 ZNF518BQ9C0D4 1074 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MROH8Q9H579 483 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CLMPQ9H6B4 373 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 LRRC40Q9H9A6 602 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PREBQ9HCU5 417 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SLC35C2Q9NQQ7 365 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 NECTIN3Q9NQS3 549 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 TAS2R3Q9NYW6 316 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 GRHL1Q9NZI5 618 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 REV1Q9UBZ9 1251 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PCDHGB7Q9Y5F8 929 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ADAMTS7Q9UKP4 1686 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MYPNQ86TC9 1320 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 LCHNA4D1U4 455 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 AQP12BA6NM10 295 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ERI2A8K979 691 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 C12orf71A8MTZ7 269 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 E7EWF7 191 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MID1O15344 667 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ACSL4O60488 711 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 OR2B3O76000 313 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SCGNO76038 276 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 STK17BO94768 372 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 KDM4BO94953 1096 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SLITRK5O94991 958 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 HTR3BO95264 441 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PAK4O96013 591 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 UBBP0CG47 229 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 UBCP0CG48 685 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 STAG3L3P0CL85 134 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CSH1P0DML2 217 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CSH2P0DML3 217 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CHRNB1P11230 501 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MYCLP12524 364 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 MYCLP1P12525 358 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 LBPP18428 481 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CTNNB1P35222 781 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SLC1A2P43004 574 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ALDH3B1P43353 468 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MRPL19P49406 292 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 CCNG1P51959 295 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 EFNA5P52803 228 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 LIMK2P53671 638 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 GEMP55040 296 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 TCTAP57738 103 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 FBXW4P57775 412 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PTENP60484 403 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 RPS27AP62979 156 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 UBA52P62987 128 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 PTPROQ16827 1216 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 EXOC3L2Q2M3D2 409 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PAGE2BQ5JRK9 111 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SPANXN3Q5MJ09 141 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.57□□□□□ -1.84
USP53-205ENST00000509769 AVPI1Q5T686 147 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 LPCAT4Q643R3 524 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ELP2Q6IA86 826 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 MFSD5Q6N075 450 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 TTI2Q6NXR4 508 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 METTL2BQ6P1Q9 378 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 ZNF549Q6P9A3 640 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SERPINA13PQ6UXR4 307 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 OTOAQ7RTW8 1153 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SPATA19Q7Z5L4 167 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 VTCN1Q7Z7D3 282 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 AQP12AQ8IXF9 295 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 TCEANCQ8N8B7 351 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ENDOVQ8N8Q3 282 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 SUPT20HQ8NEM7 779 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 HPSE2Q8WWQ2 592 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ZNF486Q96H40 463 aaPredicted RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 CPNE1Q99829 537 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 AGPAT1Q99943 283 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 OSBPL7Q9BZF2 842 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PUS7LQ9H0K6 701 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 WDR41Q9HAD4 459 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 PCDH9Q9HC56 1237 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 IL1RAPQ9NPH3 570 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 SLC5A4Q9NY91 659 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 HSPBP1Q9NZL4 362 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CHKBQ9Y259 395 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 ANGPT4Q9Y264 503 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 AAR2Q9Y312 384 aaKnown RBP3.57□□□□□ -1.84
USP53-205ENST00000509769 CAPN6Q9Y6Q1 641 aa3.57□□□□□ -1.84
USP53-205ENST00000509769 CCDC195A0A1B0GUA6 201 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 FABP12A6NFH5 140 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 SMIM22K7EJ46 135 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 M0R129 80 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 GPAA1O43292 621 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 NDUFB5O43674 189 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 CABYRO75952 493 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 AP2A2O94973 939 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 SCELO95171 688 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 EGFRP00533 1210 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms