RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CEP104O60308 925 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 AGR2O95994 175 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 IGHV4-39P01824 125 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 PRSS56P0CW18 603 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 GNB3P16520 340 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 EIF2S3P41091 472 aaKnown RBP3.64□□□□□ -1.83
VPS50-219ENST00000495039 GPD2P43304 727 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 GTF2H2Q13888 395 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 NAA35Q5VZE5 725 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 GTF2H2CQ6P1K8 395 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 MMS22LQ6ZRQ5 1243 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 MOB3CQ70IA8 216 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 MTSS1LQ765P7 747 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 TRIM58Q8NG06 486 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 RAB40AQ8WXH6 277 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 HTRA1Q92743 480 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 ZNF653Q96CK0 615 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 EIF2AK1Q9BQI3 630 aaKnown RBP3.64□□□□□ -1.83
VPS50-219ENST00000495039 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.64□□□□□ -1.83
VPS50-219ENST00000495039 TFB2MQ9H5Q4 396 aaKnown RBP3.64□□□□□ -1.83
VPS50-219ENST00000495039 WASH6PQ9NQA3 447 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 PGAP2Q9UHJ9 254 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 HSF4Q9ULV5 492 aa3.64□□□□□ -1.83
VPS50-219ENST00000495039 IGLV5-45A0A087WSX0 123 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 CAVIN2O95810 425 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 G6PDP11413 515 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 CORO1AP31146 461 aaKnown RBP3.63□□□□□ -1.83
VPS50-219ENST00000495039 HNRNPH2P55795 449 aaKnown RBP3.63□□□□□ -1.83
VPS50-219ENST00000495039 PDE1BQ01064 536 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 TDGQ13569 410 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 GPR68Q15743 365 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 WDR38Q5JTN6 314 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 CCDC70Q6NSX1 233 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 ANKRD54Q6NXT1 300 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 KCTD18Q6PI47 426 aaPredicted RBP3.63□□□□□ -1.83
VPS50-219ENST00000495039 ZNF440Q8IYI8 595 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 PAF1Q8N7H5 531 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 ANKRD52Q8NB46 1076 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 LSM14AQ8ND56 463 aaKnown RBP3.63□□□□□ -1.83
VPS50-219ENST00000495039 TNIP2Q8NFZ5 429 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 RUFY2Q8WXA3 655 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 TAAR8Q969N4 342 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 CLSTN3Q9BQT9 956 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 PHF7Q9BWX1 381 aaPredicted RBP3.63□□□□□ -1.83
VPS50-219ENST00000495039 LMAN2LQ9H0V9 348 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 SLC32A1Q9H598 525 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 EPHX3Q9H6B9 360 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 ESRP2Q9H6T0 727 aaKnown RBP3.63□□□□□ -1.83
VPS50-219ENST00000495039 RPS10P5Q9NQ39 176 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 TBX20Q9UMR3 447 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 CARD8Q9Y2G2 431 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 C2CD2Q9Y426 696 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 STON1Q9Y6Q2 735 aa3.63□□□□□ -1.83
VPS50-219ENST00000495039 A0A0G2JLW4 131 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 GOLGA6L10A0A0M3HER8 536 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 A0A1B0GVC2 190 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 PER2O15055 1255 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 PRKNO60260 465 aaPredicted RBP3.62□□□□□ -1.83
VPS50-219ENST00000495039 HNRNPA1P09651 372 aaKnown RBP eCLIP3.62□□□□□ -1.83
VPS50-219ENST00000495039 ERVK-10P10266 1014 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 ETFAP13804 333 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 ZNF26P17031 533 aaPredicted RBP3.62□□□□□ -1.83
VPS50-219ENST00000495039 DDX5P17844 614 aaKnown RBP3.62□□□□□ -1.83
VPS50-219ENST00000495039 TUBP50607 506 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 CDH15P55291 814 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 CLDN2P57739 230 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 ISL1P61371 349 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 RPP30P78346 268 aaKnown RBP3.62□□□□□ -1.83
VPS50-219ENST00000495039 CAMK1Q14012 370 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 ZNF234Q14588 700 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 CCDC96Q2M329 555 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 ZFP69Q49AA0 526 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 FAM53AQ6NSI3 398 aaPredicted RBP3.62□□□□□ -1.83
VPS50-219ENST00000495039 SLC22A25Q6T423 547 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 HEATR4Q86WZ0 1026 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 KIAA2013Q8IYS2 634 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 IL17REQ8NFR9 667 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 ZCCHC10Q8TBK6 192 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 FBXL8Q96CD0 374 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 APOPT1Q96IL0 206 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 EYA3Q99504 573 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 INTS2Q9H0H0 1204 aaKnown RBP3.62□□□□□ -1.83
VPS50-219ENST00000495039 MKKSQ9NPJ1 570 aaPredicted RBP3.62□□□□□ -1.83
VPS50-219ENST00000495039 DDX4Q9NQI0 724 aaKnown RBP3.62□□□□□ -1.83
VPS50-219ENST00000495039 CCDC177Q9NQR7 707 aaPredicted RBP3.62□□□□□ -1.83
VPS50-219ENST00000495039 IL1RAPL1Q9NZN1 696 aa3.62□□□□□ -1.83
VPS50-219ENST00000495039 MEIOCA2RUB1 952 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 PABPN1LA6NDY0 278 aaKnown RBP3.61□□□□□ -1.83
VPS50-219ENST00000495039 A6NLC8 198 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 TEX22C9J3V5 150 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 TSPAN4O14817 238 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 ZNF821O75541 412 aaPredicted RBP3.61□□□□□ -1.83
VPS50-219ENST00000495039 MMP2P08253 660 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 HOXC8P31273 242 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 PAFAH1B1P43034 410 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 GALNT2Q10471 571 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 ITGA9Q13797 1035 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 BAK1Q16611 211 aa3.61□□□□□ -1.83
VPS50-219ENST00000495039 INTS11Q5TA45 600 aaKnown RBP3.61□□□□□ -1.83
VPS50-219ENST00000495039 NAXEQ8NCW5 288 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms