RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 hDV102S1A0JD36 115 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 DYTNA2CJ06 578 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 RRN3P2A6NIE6 340 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 H0YIN7 160 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 TIMM23O14925 209 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 IPO8O15397 1037 aaKnown RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 TPD52L2O43399 206 aaKnown RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 TIPRLO75663 272 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 ZBTB11O95625 1053 aaPredicted RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 GALTP07902 379 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 GPTP24298 496 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 TTKP33981 857 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 RFC4P35249 363 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 COMPP49747 757 aaPredicted RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 TLE2Q04725 743 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 CAMK1Q14012 370 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 HIST2H2ACQ16777 129 aaPredicted RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 ESCO2Q56NI9 601 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 C18orf65Q6ZTR6 163 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 BBS12Q6ZW61 710 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 USP50Q70EL3 339 aaPredicted RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 TMTC1Q8IUR5 882 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 SMC5Q8IY18 1101 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 DSELQ8IZU8 1212 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 GPC2Q8N158 579 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 AADATQ8N5Z0 425 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 SCCPDHQ8NBX0 429 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 LSM14AQ8ND56 463 aaKnown RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 MYRIPQ8NFW9 859 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 LMO3Q8TAP4 145 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 MAELQ96JY0 434 aaKnown RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 LMLNQ96KR4 655 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 UBXN10Q96LJ8 280 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 HNRNPABQ99729 332 aaKnown RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 KXD1Q9BQD3 176 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 MSTO1Q9BUK6 570 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 MYH16Q9H6N6 1097 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 CLK4Q9HAZ1 481 aaKnown RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 BPIFA1Q9NP55 256 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 PLSCR4Q9NRQ2 329 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 SNTG1Q9NSN8 517 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 BEX4Q9NWD9 120 aaPredicted RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 PPP1R14DQ9NXH3 145 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 RRN3Q9NYV6 651 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 RAI14Q9P0K7 980 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 HCN3Q9P1Z3 774 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 KIAA1456Q9P272 454 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 CTNNAL1Q9UBT7 734 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 HSF4Q9ULV5 492 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 TBX20Q9UMR3 447 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 SLC45A1Q9Y2W3 748 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 LRP12Q9Y561 859 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 SNX9Q9Y5X1 595 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 LY75O60449 1722 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 SETXQ7Z333 2677 aaKnown RBP2.22□□□□□ -2.05
HMGB1-208ENST00000490788 ANKRD36BQ8N2N9 1353 aa2.22□□□□□ -2.05
HMGB1-208ENST00000490788 ATXN2Q99700 1313 aaKnown RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 IQGAP3Q86VI3 1631 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 ZDBF2Q9HCK1 2354 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 MKI67P46013 3256 aaKnown RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 ZFHX4Q86UP3 3567 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 SAA2-SAA4A0A096LPE2 208 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 IGLV5-52A0A0A0MRZ9 124 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 A0A0U1RQJ8 604 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 GAGE10A6NGK3 116 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 HSPB2A8KAH6 182 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 TEX22C9J3V5 150 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 KLRF2D3W0D1 207 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 PRR23D1E9PI22 279 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 MPHOSPH10O00566 681 aaKnown RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 TNPO2O14787 897 aaKnown RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 BCAT2O15382 392 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 ZIC3O60481 467 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 LDB3O75112 727 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 GAGE7O76087 117 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 MT-CYBP00156 380 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 C4BP0C0L5 1744 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 CCDC172P0C7W6 258 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 GAGE12FP0CL80 117 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 GAGE12GP0CL81 117 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 GAGE12IP0CL82 117 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 PRR23D2P0DMB1 279 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 SRD5A1P18405 259 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 CHATP28329 748 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 STX2P32856 288 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 RYKP34925 604 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 ARL1P40616 181 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 EPS15P42566 896 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 SSR1P43307 286 aaKnown RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 VAMP2P63027 116 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 ECT2LQ008S8 904 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 GAGE1Q13065 139 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 GAGE4Q13068 117 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 MYBPHQ13203 477 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 SNTA1Q13424 505 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 SF3B4Q15427 424 aaKnown RBP eCLIP2.21□□□□□ -2.065e-8■■■■□ 21.4
HMGB1-208ENST00000490788 HSPB2Q16082 182 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 SOWAHAQ2M3V2 549 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 TCTN1Q2MV58 587 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms