RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ALDH1A3P47895 512 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 DSG1Q02413 1049 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 TRAF2Q12933 501 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 GPR17Q13304 367 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CDH18Q13634 790 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CYLC2Q14093 348 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 HNRNPDQ14103 355 aaKnown RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 ZYG11AQ6WRX3 759 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CLEC14AQ86T13 490 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 ISCA2Q86U28 154 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 MIER2Q8N344 545 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 KDM1BQ8NB78 822 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 OR6Y1Q8NGX8 325 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 OR4L1Q8NH43 312 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 PXYLP1Q8TE99 480 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 STYXQ8WUJ0 223 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 PPWD1Q96BP3 646 aaKnown RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 CNBD2Q96M20 576 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 MCMBPQ9BTE3 642 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 GPR63Q9BZJ6 419 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CCDC68Q9H2F9 335 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 SOX17Q9H6I2 414 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 VPS45Q9NRW7 570 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 TREX1Q9NSU2 369 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 TMEM39AQ9NV64 488 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 STX18Q9P2W9 335 aaKnown RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 UBA2Q9UBT2 640 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 VPS4AQ9UN37 437 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 NYNRINQ9P2P1 1898 aaKnown RBP8.34□□□□□ -1.07
CD44-208ENST00000428726 MYLKQ15746 1914 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 E5RI56 91 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 E7ENX8 843 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 PIP5K1BO14986 540 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 H2AFYO75367 372 aaKnown RBP8.34□□□□□ -1.07
CD44-208ENST00000428726 CLDN7O95471 211 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 CLIC3O95833 236 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 APOA4P06727 396 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 ALOX15P16050 662 aaPredicted RBP8.34□□□□□ -1.07
CD44-208ENST00000428726 EEF1DP29692 281 aaKnown RBP8.34□□□□□ -1.07
CD44-208ENST00000428726 RHOAP61586 193 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 FLOT2Q14254 428 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 RBBP7Q16576 425 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 HECTD3Q5T447 861 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 TIGD7Q6NT04 549 aaPredicted RBP8.34□□□□□ -1.07
CD44-208ENST00000428726 ACAD11Q709F0 780 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 LCA5Q86VQ0 697 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 FAM126BQ8IXS8 530 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 OR52B6Q8NGF0 335 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 SEPT8Q92599 483 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 EID2BQ96D98 161 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 TEX37Q96LM6 180 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 TMEM74Q96NL1 305 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 C17orf80Q9BSJ5 609 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 EIF2B4Q9UI10 523 aaKnown RBP8.34□□□□□ -1.07
CD44-208ENST00000428726 SLCO3A1Q9UIG8 710 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 DNMT3LQ9UJW3 386 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 ANKRD6Q9Y2G4 727 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 VWA8A3KMH1 1905 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 MIA3Q5JRA6 1907 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 TRANK1O15050 2925 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 TMEM114B3SHH9 223 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 PLK4O00444 970 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 TMCC1O94876 653 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 EOMESO95936 686 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 PYGLP06737 847 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 CASP9P55211 416 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 AP2B1P63010 937 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 RPS6KA2Q15349 733 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 TRIP4Q15650 581 aaPredicted RBP8.34□□□□□ -1.07
CD44-208ENST00000428726 UGP2Q16851 508 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.34□□□□□ -1.07
CD44-208ENST00000428726 LRRC49Q8IUZ0 686 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 CCDC117Q8IWD4 279 aaPredicted RBP8.34□□□□□ -1.07
CD44-208ENST00000428726 BBS7Q8IWZ6 715 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 BEND7Q8N7W2 519 aaPredicted RBP8.34□□□□□ -1.07
CD44-208ENST00000428726 C2CD4AQ8NCU7 369 aaPredicted RBP8.34□□□□□ -1.07
CD44-208ENST00000428726 GDPD5Q8WTR4 605 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 TCEAL4Q96EI5 215 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 PAWRQ96IZ0 340 aaKnown RBP8.34□□□□□ -1.07
CD44-208ENST00000428726 SH3GL3Q99963 347 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 ECSITQ9BQ95 431 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 LINC00597Q9H2U6 94 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 WDR41Q9HAD4 459 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 CATSPERZQ9NTU4 200 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 TRPM5Q9NZQ8 1165 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 RNF112Q9ULX5 631 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 RAP2CQ9Y3L5 183 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 PTPRDP23468 1912 aa8.34□□□□□ -1.07
CD44-208ENST00000428726 PATJQ8NI35 1801 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 SDHDO14521 159 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 INPPL1O15357 1258 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 STX7O15400 261 aaKnown RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 IPO13O94829 963 aaKnown RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 SNUPNO95149 360 aaKnown RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 LTA4HP09960 611 aaKnown RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 MTHFD1P11586 935 aaKnown RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 MYOGP15173 224 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 GRIA2P42262 883 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 ARF5P84085 180 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 RBBP5Q15291 538 aaKnown RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms