RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 ANKRD49Q8WVL7 239 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 KCNJ9Q92806 393 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 ALG14Q96F25 216 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 C1QTNF3Q9BXJ4 246 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 VCX3BQ9H321 246 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 GSTO2Q9H4Y5 243 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 ALG9Q9H6U8 611 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 SUDS3Q9H7L9 328 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-205ENST00000410093 SPO11Q9Y5K1 396 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 CPQQ9Y646 472 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 ZNF106Q9H2Y7 1883 aaKnown RBP13.53□□□□□ -0.24
LIMS1-205ENST00000410093 MTCL1Q9Y4B5 1905 aaKnown RBP13.52□□□□□ -0.24
LIMS1-205ENST00000410093 H3BMM5 538 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 CD160O95971 181 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 CYBBP04839 570 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 PTDSS1P48651 473 aaKnown RBP13.52□□□□□ -0.25
LIMS1-205ENST00000410093 SGSHP51688 502 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 EPHB1P54762 984 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 SULT2A1Q06520 285 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 CUL3Q13618 768 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 RCN1Q15293 331 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 CCDC85BQ15834 202 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-205ENST00000410093 TMEM207Q6UWW9 146 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 RIPOR1Q6ZS17 1223 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 PELI3Q8N2H9 469 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 PHTF2Q8N3S3 785 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 FBXW8Q8N3Y1 598 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 TTC30BQ8N4P2 665 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 GIMAP7Q8NHV1 300 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 ISG20Q96AZ6 181 aaKnown RBP13.52□□□□□ -0.25
LIMS1-205ENST00000410093 PDLIM5Q96HC4 596 aaKnown RBP13.52□□□□□ -0.25
LIMS1-205ENST00000410093 LENG8Q96PV6 779 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-205ENST00000410093 CYP2S1Q96SQ9 504 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 EMILIN2Q9BXX0 1053 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 NKX1-2Q9UD57 310 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-205ENST00000410093 VPS51Q9UID3 782 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 CDH22Q9UJ99 828 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 APPL1Q9UKG1 709 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 LZTS1Q9Y250 596 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 TRAF6Q9Y4K3 522 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 IRAK3Q9Y616 596 aa13.52□□□□□ -0.25
LIMS1-205ENST00000410093 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.52□□□□□ -0.25
LIMS1-205ENST00000410093 OR51F1A6NGY5 319 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 DLL1O00548 723 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 SDHDO14521 159 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 KLK8O60259 260 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 FGF18O76093 207 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 PGLSO95336 258 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 ACADSP16219 412 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 ITGAXP20702 1163 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 RPS3P23396 243 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIMS1-205ENST00000410093 GABRR2P28476 465 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 EPHA3P29320 983 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 MC4RP32245 332 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 ACADVLP49748 655 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 MTTPP55157 894 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 TRAF2Q12933 501 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 SKIV2LQ15477 1246 aaKnown RBP13.51□□□□□ -0.25
LIMS1-205ENST00000410093 NXNQ6DKJ4 435 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 TLDC1Q6P9B6 456 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 LILRA6Q6PI73 481 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 PGAM4Q8N0Y7 254 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 CBARPQ8N350 705 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-205ENST00000410093 SPATA6LQ8N4H0 392 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 FIBCD1Q8N539 461 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 ARL14EPQ8N8R7 260 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-205ENST00000410093 LEMD2Q8NC56 503 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 ADAMTS19Q8TE59 1207 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 WDR60Q8WVS4 1066 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 SGF29Q96ES7 293 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 PANX3Q96QZ0 392 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 TUBGCP5Q96RT8 1024 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 ATOH8Q96SQ7 321 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 WDR55Q9H6Y2 383 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-205ENST00000410093 ZNF334Q9HCZ1 680 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-205ENST00000410093 MAN1C1Q9NR34 630 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 ABCB8Q9NUT2 735 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 TMEM45AQ9NWC5 275 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 SMPD4Q9NXE4 827 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 TRMT6Q9UJA5 497 aaKnown RBP13.51□□□□□ -0.25
LIMS1-205ENST00000410093 PCDHGC4Q9Y5F7 938 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 SLC30A1Q9Y6M5 507 aa13.51□□□□□ -0.25
LIMS1-205ENST00000410093 UBA6A0AVT1 1052 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-205ENST00000410093 HTRA2O43464 458 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-205ENST00000410093 TGM5O43548 720 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 GPC4O75487 556 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 SUPT7LO94864 414 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 MLYCDO95822 493 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 IGSF6O95976 241 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 SLC4A1P02730 911 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 MZF1P28698 734 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-205ENST00000410093 CSKP41240 450 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 IL2P60568 153 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 HTRA4P83105 476 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-205ENST00000410093 SLC25A3Q00325 362 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 TIAL1Q01085 375 aaKnown RBP eCLIP13.5□□□□□ -0.25
LIMS1-205ENST00000410093 BCL2L1Q07817 233 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 TBL3Q12788 808 aaKnown RBP13.5□□□□□ -0.25
LIMS1-205ENST00000410093 ART3Q13508 389 aa13.5□□□□□ -0.25
LIMS1-205ENST00000410093 ADGRE1Q14246 886 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms