RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 YIPF6Q96EC8 236 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 CCDC126Q96EE4 140 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ZNF300Q96RE9 604 aaPredicted RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 UQCC2Q9BRT2 126 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PRR14Q9BWN1 585 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 TRIM54Q9BYV2 358 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ACAD9Q9H845 621 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 MEAF6Q9HAF1 191 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ZNF304Q9HCX3 659 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 KMT5AQ9NQR1 393 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 TOR4AQ9NXH8 423 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PAQR5Q9NXK6 330 aaPredicted RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ARHGAP28Q9P2N2 729 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 TLK1Q9UKI8 766 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 FAM149AA5PLN7 773 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 C12orf71A8MTZ7 269 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 H3BMM5 538 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ERVH48-1M5A8F1 160 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PPEF1O14829 653 aaPredicted RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 HNRNPDLO14979 420 aaKnown RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 CAPN5O15484 640 aaPredicted RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 TPST1O60507 370 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 B4GALT4O60513 344 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 SNX2O60749 519 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 SERPINI2O75830 405 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 SOAT2O75908 522 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PRKD3O94806 890 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 C4BPAP04003 597 aaKnown RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 HLA-DOAP06340 250 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PGK2P07205 417 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 CFHP08603 1231 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ITGA2P17301 1181 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 HOXB6P17509 224 aaKnown RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PCMT1P22061 227 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 MIPP30301 263 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 NR2C2P49116 596 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 B2MP61769 119 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 RFX4Q33E94 735 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ADPRMQ3LIE5 342 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PPM1JQ5JR12 505 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ZBTB41Q5SVQ8 909 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 TREML2Q5T2D2 321 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 TDRD10Q5VZ19 366 aaKnown RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 NPNTQ6UXI9 565 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ZNF517Q6ZMY9 492 aaPredicted RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PTRH1Q86Y79 214 aaKnown RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 CLEC4FQ8N1N0 589 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 MPP5Q8N3R9 675 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PSD4Q8NDX1 1056 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 TMEM161BQ8NDZ6 487 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 SETD9Q8NE22 299 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 CHDHQ8NE62 594 aaPredicted RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 LRRC20Q8TCA0 184 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ZHX1-C8orf76Q96EF9 292 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PPP1R36Q96LQ0 422 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 TBCBQ99426 244 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ZNF670Q9BS34 389 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 MRPL9Q9BYD2 267 aaKnown RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 LHX5Q9H2C1 402 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 TASP1Q9H6P5 420 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 TMEM134Q9H6X4 195 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 IARS2Q9NSE4 1012 aaKnown RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 CCDC59Q9P031 241 aaKnown RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 NYAP2Q9P242 653 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 WRAP73Q9P2S5 460 aaPredicted RBP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 ZDHHC2Q9UIJ5 367 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.11□□□□□ -1.11
ATG4A-201ENST00000343524 BTBD3Q9Y2F9 522 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 TPRKBQ9Y3C4 175 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 IRS2Q9Y4H2 1338 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PCDHGA8Q9Y5G5 932 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 PEX16Q9Y5Y5 336 aa8.11□□□□□ -1.11
ATG4A-201ENST00000343524 CCDC154A6NI56 674 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 ZBBXA8MT70 800 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 SLC1A7O00341 560 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 PRPSAP2O60256 369 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 TRIM3O75382 744 aaPredicted RBP8.1□□□□□ -1.11
ATG4A-201ENST00000343524 CNTN5O94779 1100 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 PRLP01236 227 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 CCNCP24863 283 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 IL12RB1P42701 662 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 TM4SF4P48230 202 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 POLD2P49005 469 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 SEPHS1P49903 392 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 GMPSP49915 693 aaPredicted RBP8.1□□□□□ -1.11
ATG4A-201ENST00000343524 DSTNP60981 165 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 GHRHRQ02643 423 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 PRPSAP1Q14558 356 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 CARTPTQ16568 116 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 HSDL1Q3SXM5 330 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 SYT6Q5T7P8 510 aaPredicted RBP8.1□□□□□ -1.11
ATG4A-201ENST00000343524 FAM205BPQ63HN1 556 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 HEATR6Q6AI08 1181 aaKnown RBP8.1□□□□□ -1.11
ATG4A-201ENST00000343524 GPAT2Q6NUI2 795 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 VN1R5Q7Z5H4 357 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 RAB43Q86YS6 212 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 SPPL2CQ8IUH8 684 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 LIX1LQ8IVB5 337 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 METTL4Q8N3J2 472 aa8.1□□□□□ -1.11
ATG4A-201ENST00000343524 CADM2Q8N3J6 435 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms